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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SAVRSRAEAVKVSRTFDYMILFTVFFVVLGGYHIHYMLTGGDWDFWTDWKDRRLWVTVAPIVSITFPAAVQAVLWWRYRI
AWGATLCVLGLLLGEWINRYFNFWGWTYFPVNFVFPSNLMPGAIVLDVILMLSNSMTLTAVVGGLAWGLLFYPGNWPIIA
PLHVPVEYNGMMMTLADLQGYHYVRTGTPEYIRMVEKGTLRTFGKDVAPVSAFFSGFVSILIYFLWHFFGSWFGSEKFV

The query sequence (length=239) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6cxh:B 241 239 1.0000 0.9917 1.0000 5.54e-176 7s4l:B, 7s4l:G, 7s4l:F
2 7t4p:B 241 238 0.7824 0.7759 0.7857 1.11e-143 7t4p:F, 7t4p:J
3 7s4m:F 244 236 0.6276 0.6148 0.6356 5.91e-104 7s4m:B, 7s4m:J
4 3chx:B 238 236 0.6109 0.6134 0.6186 1.31e-102 3chx:F, 3chx:J
5 2g80:A 225 38 0.0628 0.0667 0.3947 0.29 2g80:B, 2g80:C, 2g80:D
6 6ohr:A 576 70 0.0669 0.0278 0.2286 1.3 6ohr:B, 6ohr:C, 6ohr:D, 6ohr:E, 6u8z:A
7 7d7c:F 137 41 0.0502 0.0876 0.2927 4.4 7d7d:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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