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BioLiP
>protein
SAVKKQRIDLRLTDDDKSMIEEAAAISNQSVSQFMLNSASQRAAEVIEQHRRVILNEESWTRVMDALSNPP

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6gts:C 83 68 0.9577 0.8193 1.0000 4.17e-45 6gts:B
2 5zgn:B 82 68 0.7183 0.6220 0.7500 1.28e-34 5zgn:A, 5zgn:D, 5zgn:E
3 1eyx:B 177 27 0.1831 0.0734 0.4815 0.51 1eyx:L, 1lia:B, 1lia:L
4 7cnp:A 559 38 0.1690 0.0215 0.3158 0.69 7cnp:B, 7cnp:C, 7cnq:A, 7cnq:B, 7cnq:C, 7cnq:D, 7d2r:A
5 7br7:x 1325 39 0.1549 0.0083 0.2821 2.3 7bqx:x

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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