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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SATSTTIAKHIGNSNPLIDHHLGADPVALTYNGRVYIYMSSDDYEYNSNGTIKDNSFANLNRVFVISSADMVNWTDHGAI
PVAGANGANGGRGIAKWAGASWAPSIAVKKINGKDKFFLYFANSGGGIGVLTADSPIGPWTDPIGKPLVTPSTPGMSGVV
WLFDPAVFVDDDGTGYLYAGGGVPGVSNPTQGQWANPKTARVIKLGPDMTSVVGSASTIDAPFMFEDSGLHKYNGTYYYS
YCINFGGTHPADKPPGEIGYMTSSSPMGPFTYRGHFLKNPGAFFGGGGNNHHAVFNFKNEWYVVYHAQTVSSALFGAGKG
YRSPHINKLVHNADGSIQEVAANYAGVTQISNLNPYNRVEAETFAWNGRILTEKSTAPGGPVNNQHVTSIQNGDWIAVGN
ADFGAGGARSFKANVASTLGGKIEVRLDSADGKLVGTLNVPSTGGAQTWREIETAVSGATGVHKVFFVFTGTGTGNLFNF
DYWQFTQR

The query sequence (length=488) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3c7g:A 488 488 1.0000 1.0000 1.0000 0.0 3c7e:A, 3c7f:A, 3c7h:A, 3c7o:A
2 8hcj:D 433 493 0.3279 0.3695 0.3245 5.81e-65 8hcj:E, 8hcj:H, 8hcj:A, 8hcj:B, 8hcj:G, 8hcj:C, 8hcj:F
3 3qed:B 305 342 0.2254 0.3607 0.3216 2.34e-36 3qed:A, 3qed:C, 3qed:D, 3qee:A, 3qee:B, 3qef:A, 3qef:B
4 5gll:A 331 367 0.2439 0.3595 0.3243 1.99e-30 5glk:B, 5glm:A, 5glm:B, 5gln:A, 5gln:B, 5glo:A, 5glo:B, 5glp:A, 5glp:B, 5glq:A, 5glq:B, 5glr:A, 5glr:B
5 2v4v:A 129 135 0.1148 0.4341 0.4148 3.81e-22
6 6xn1:B 333 369 0.2254 0.3303 0.2981 6.29e-22 6xn1:A, 6xn2:B, 6xn2:A
7 4mlg:G 324 352 0.2152 0.3241 0.2983 1.09e-20 4mlg:A, 4mlg:B, 4mlg:C, 4mlg:D, 4mlg:E, 4mlg:F, 4mlg:H, 4mlg:I, 4mlg:J, 4mlg:K, 4mlg:L
8 1w9t:A 134 133 0.0984 0.3582 0.3609 1.14e-14 1w9t:B, 1w9w:A
9 1uy1:A 132 93 0.0799 0.2955 0.4194 1.89e-14 1uy2:A, 1uy3:A, 1uy4:A
10 1gmm:A 126 133 0.0902 0.3492 0.3308 2.92e-12 1uxx:X
11 3kst:A 291 256 0.1537 0.2577 0.2930 4.15e-12 3kst:B
12 1o8p:A 131 98 0.0758 0.2824 0.3776 5.00e-10 1nae:A, 1o8s:A, 1od3:A
13 5msx:C 440 256 0.1557 0.1727 0.2969 1.39e-09 5msx:A, 5msx:B
14 5fui:A 124 121 0.0656 0.2581 0.2645 2.37e-06
15 5c0p:A 284 125 0.0738 0.1268 0.2880 0.001
16 1uyy:A 131 108 0.0635 0.2366 0.2870 0.003 1uy0:A, 1uy0:B, 1uyx:A, 1uyx:B, 1uyy:B, 1uyz:A, 1uyz:B, 1uz0:A
17 7k1r:A 536 242 0.1270 0.1157 0.2562 0.011 7k1r:B, 7k1r:C, 7k1r:D, 8uws:C, 8uws:D, 8uws:A, 8uws:B
18 5joz:A 507 141 0.0799 0.0769 0.2766 0.040 5joz:B
19 4ak7:B 373 140 0.0779 0.1019 0.2714 0.040 4ak7:A
20 5ta9:A 369 141 0.0717 0.0949 0.2482 0.096 5ta9:B, 5ta9:C, 5ta9:D
21 7byv:A 428 231 0.1086 0.1238 0.2294 0.10 7bys:A, 7bys:B, 7byt:A, 7byx:A, 7byx:B, 7byx:C, 7byx:D
22 5tma:A 567 125 0.0717 0.0617 0.2800 0.15 3oe1:A, 3oe1:B, 3oe1:C, 3oe1:D, 5tma:B, 2wva:A, 2wva:B, 2wva:E, 2wva:F, 2wva:V, 2wva:Z, 2wva:X, 2wva:Y, 2wvg:A, 2wvg:B, 2wvg:E, 2wvg:F, 1zpd:A, 1zpd:B, 1zpd:E, 1zpd:F, 4zp1:A, 4zp1:B, 4zp1:C, 4zp1:D
23 4u6b:A 343 127 0.0697 0.0991 0.2677 0.43 4u6b:B, 4u6b:C, 4u6b:D
24 5g56:A 707 129 0.0676 0.0467 0.2558 0.50 5la0:A, 5la1:A, 5la2:A, 5la2:B, 2y8k:A
25 4u6d:B 385 185 0.0984 0.1247 0.2595 0.78 4u6d:A
26 2exh:A 533 88 0.0533 0.0488 0.2955 1.2 2exh:B, 2exh:C, 2exh:D, 2exi:A, 2exi:B, 2exi:C, 2exi:D, 2exj:A, 2exj:B, 2exj:C, 2exj:D, 2exk:A, 2exk:B, 2exk:C, 2exk:D
27 3r4z:B 359 103 0.0553 0.0752 0.2621 1.8 3r4z:A
28 5kag:D 423 173 0.0922 0.1064 0.2601 2.3 5kag:A, 5kag:B, 5kag:C, 5kag:E, 5kag:F, 5kag:G, 5kag:H, 5kag:I, 5kag:J, 5kag:K, 5kag:L, 5kah:A, 5kah:B, 5kah:C, 5kah:D, 5kah:E, 5kah:F, 5kah:G, 5kah:H, 5kah:I, 5kah:J, 5kah:K, 5kah:L, 5kaj:A, 5kaj:B, 5kaj:C, 5kaj:D, 5kaj:E, 5kaj:F, 5kaj:G, 5kaj:H, 5kaj:I, 5kaj:J, 5kaj:K, 5kaj:L, 2np9:A, 2np9:B, 2np9:C, 2pg8:A, 2pg8:B, 2pg8:C, 4ylh:A, 4ylh:B, 4ylh:C, 4ylh:D, 4ylh:E, 4ylh:F, 4ylh:G, 4ylh:H, 4ylh:I, 4ylh:J, 4ylh:K, 4ylh:L
29 7d6n:D 589 71 0.0389 0.0323 0.2676 3.7 7d6n:A, 7d6n:B, 7d6n:E, 7d6n:C, 7d6n:F, 7d6n:G, 7d6n:J, 7d6n:I, 7d6n:H
30 7y9p:A 357 53 0.0410 0.0560 0.3774 5.3
31 5mrc:B 321 201 0.1066 0.1620 0.2587 6.3 3j6b:B, 5mre:B, 5mrf:B
32 5hxm:A 1060 76 0.0430 0.0198 0.2763 8.7 5f7u:A, 5hpo:A, 5i0d:A, 5i0d:B, 4kmq:A, 4kwu:A
33 1nyt:A 271 79 0.0471 0.0849 0.2911 8.8 1nyt:B, 1nyt:C, 1nyt:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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