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BioLiP
>protein
SARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARESYK

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3qmb:A 54 53 1.0000 0.9815 1.0000 2.30e-33 3qmc:A, 3qmd:A, 3qmg:A, 3qmh:A, 3qmi:A
2 5w9q:A 56 42 0.5283 0.5000 0.6667 3.08e-12 5w9q:B
3 4o64:A 116 40 0.4906 0.2241 0.6500 1.46e-11 4o64:B, 4o64:C
4 4bbq:A 111 40 0.4528 0.2162 0.6000 2.44e-09 4bbq:B
5 6asb:F 85 30 0.3774 0.2353 0.6667 2.65e-09
6 6asb:I 121 29 0.3774 0.1653 0.6897 2.76e-09 6asb:C, 6asb:L
7 2j2s:A 72 44 0.4151 0.3056 0.5000 1.77e-08 2jyi:A, 2kkf:A, 4nw3:A
8 4pzi:A 61 47 0.4340 0.3770 0.4894 5.33e-08
9 4wxx:B 1178 42 0.3962 0.0178 0.5000 3.79e-06 3epz:A, 3epz:B, 7lmk:A, 7lmk:B, 7lmk:C, 7lmk:D, 7lmm:A, 7lmm:B, 7lmm:C, 7lmm:D, 3pta:A, 7sfc:A, 7sfd:A, 7sfe:A, 7sff:A, 7sfg:A, 5wvo:C, 4wxx:A, 6x9i:A, 6x9j:A, 6x9k:A, 7xi9:A, 7xib:A, 5ydr:B, 4yoc:A
10 3swr:A 965 42 0.3962 0.0218 0.5000 3.97e-06
11 3pt6:B 915 42 0.3962 0.0230 0.5000 8.06e-06 4da4:A, 3pt6:A, 6w8v:A
12 5exh:C 45 42 0.3019 0.3556 0.3810 0.004 4z3c:C
13 8hyj:C 285 23 0.2075 0.0386 0.4783 0.11
14 6asd:C 45 23 0.1887 0.2222 0.4348 0.12
15 2dfv:A 346 27 0.2264 0.0347 0.4444 0.12 2d8a:A, 2dfv:B, 2dfv:C
16 5vc9:C 46 41 0.2830 0.3261 0.3659 0.42 5vc9:F
17 4q47:A 513 54 0.3396 0.0351 0.3333 1.1 4q47:B, 4q48:A, 4q48:B
18 4xsv:A 306 18 0.1698 0.0294 0.5000 1.5 3elb:A
19 6dkh:C 346 33 0.2075 0.0318 0.3333 2.2 6dkh:A, 6dkh:B, 6dkh:D
20 1oyw:A 516 16 0.1698 0.0174 0.5625 2.7 1oyy:A
21 4eez:B 342 24 0.1887 0.0292 0.4167 3.0 4eex:A, 4eex:B, 4eez:A
22 4oh1:A 351 25 0.1887 0.0285 0.4000 3.0
23 1rjw:A 339 7 0.1132 0.0177 0.8571 3.4 3pii:A, 3pii:C, 3pii:B, 3pii:D, 1rjw:B, 1rjw:C, 1rjw:D
24 5w9s:C 44 23 0.2075 0.2500 0.4783 3.6
25 4hp1:C 51 41 0.2642 0.2745 0.3415 5.6 4hp3:C
26 4gkv:B 336 9 0.1132 0.0179 0.6667 5.8 4gkv:C, 4gkv:A, 4gkv:D
27 7bu2:B 339 11 0.1321 0.0206 0.6364 6.0 7bu2:A, 7bu3:A, 7bu3:B
28 3glf:G 378 21 0.1509 0.0212 0.3810 6.8 8giy:B, 8giy:C, 8giy:D, 8giz:B, 8giz:C, 8giz:D, 8gj0:B, 8gj0:C, 8gj0:D, 8gj1:B, 8gj1:C, 8gj1:D, 8gj2:B, 8gj2:C, 8gj2:D, 8gj3:B, 8gj3:C, 8gj3:D, 3glf:B, 3glf:C, 3glf:D, 3glf:H, 3glf:I, 3glg:B, 3glg:C, 3glg:D, 3glg:G, 3glg:H, 3glg:I, 3gli:B, 3gli:C, 3gli:D, 3gli:G, 3gli:H, 3gli:I, 1jr3:A, 1jr3:B, 1jr3:C, 1njf:A, 1njf:B, 1njf:C, 1njf:D, 1njg:A, 1njg:B, 8val:B, 8val:C, 8val:D, 8vam:B, 8vam:C, 8vam:D, 8vap:B, 8vap:C, 8vap:D, 8vaq:B, 8vaq:C, 8vaq:D, 8var:B, 8var:C, 8var:D, 8vas:B, 8vas:C, 8vas:D, 8vat:B, 8vat:C, 8vat:D, 1xxh:B, 1xxh:C, 1xxh:D, 1xxh:G, 1xxh:H, 1xxh:I, 1xxi:B, 1xxi:C, 1xxi:D, 1xxi:G, 1xxi:H, 1xxi:I
29 4eue:A 398 26 0.1887 0.0251 0.3846 9.5 4euf:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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