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BioLiP
>protein
SAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQKVY
FKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFYV

The query sequence (length=149) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5nal:B 150 149 1.0000 0.9933 1.0000 6.51e-110 5e80:B, 5e80:A, 5e8f:A, 5e8f:C, 5f2u:A, 5f2u:B, 4jv6:B, 4jv8:B, 4jvb:B, 4jvf:B, 5ml2:B, 5ml3:B, 5ml4:B, 5ml6:B, 5ml8:B, 7pad:B, 7pae:B, 7q9q:BBB, 7q9r:BBB, 7q9s:AAA, 7q9s:BBB, 7q9u:DDD, 7q9u:CCC, 7qf9:AAA, 7qf9:BBB, 7qjk:BBB, 7qjk:AAA, 7qjk:CCC, 7qjk:DDD, 3t5g:B, 3t5i:D, 3t5i:A, 3t5i:B, 3t5i:C, 5tar:B, 5tb5:B, 5tb5:D, 5x72:A, 5x73:A, 5x74:A, 5yav:B, 5yaw:B
2 7umo:A 169 142 0.2282 0.2012 0.2394 9.50e-08 6h6a:D, 6h6a:G, 6h6a:J, 5l7k:A, 3rbq:A, 3rbq:B, 3rbq:C, 3rbq:D, 3rbq:E, 3rbq:F, 7umo:B, 7umo:C, 7umo:D, 7umo:E, 7umo:F
3 7ok6:AAA 170 94 0.1879 0.1647 0.2979 3.32e-07 7ok6:HHH
4 7jro:b 239 46 0.1208 0.0753 0.3913 1.2 7jrp:b
5 2w8s:B 513 102 0.1678 0.0487 0.2451 2.0 2w8s:A, 2w8s:C, 2w8s:D
6 5pal:A 109 32 0.0738 0.1009 0.3438 5.7 5zgm:A, 5zgm:B
7 8gy2:A 723 27 0.0872 0.0180 0.4815 6.7
8 5zux:A 92 22 0.0805 0.1304 0.5455 6.9
9 2is6:A 654 136 0.2215 0.0505 0.2426 7.0 2is1:A, 2is1:B, 2is2:A, 2is2:B, 2is4:A, 2is6:B
10 8vk4:D 4379 53 0.1275 0.0043 0.3585 7.1 8vjj:A, 8vjj:D, 8vjj:B, 8vjj:C, 8vjk:A, 8vjk:B, 8vjk:C, 8vjk:D, 8vk3:A, 8vk3:D, 8vk3:B, 8vk3:C, 8vk4:A, 8vk4:B, 8vk4:C
11 2is4:B 632 136 0.2215 0.0522 0.2426 7.3
12 6bfn:A 301 40 0.0872 0.0432 0.3250 7.4 6bfn:B
13 4xqk:A 1517 119 0.2013 0.0198 0.2521 8.3 4xqk:B
14 6hb4:A 197 35 0.0872 0.0660 0.3714 8.6 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
15 8x5d:G 77 25 0.0738 0.1429 0.4400 9.3
16 4zm4:D 387 23 0.0738 0.0284 0.4783 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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