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BioLiP
>protein
SAKAPVITIFDHRGCSRAPKEYSKASGQDDEMMVKAQSVKIAVSDGVAESVLKDSLSVMH

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7tja:G 67 62 1.0000 0.8955 0.9677 8.42e-37 7tja:Q, 7tja:C, 7tja:K, 7tja:O, 7tlf:C, 7tlf:G, 7tlf:K, 7tlf:O
2 1qgw:B 67 61 0.8000 0.7164 0.7869 4.41e-28 1xf6:B, 1xg0:B
3 1qgw:A 76 60 0.6167 0.4868 0.6167 4.76e-19 1xf6:A, 1xg0:A
4 7tja:I 75 55 0.6167 0.4933 0.6727 5.90e-19 7tja:A, 7tja:R, 7tja:E, 7tja:M, 7tlf:A, 7tlf:E, 7tlf:I, 7tlf:M
5 7t8s:D 70 64 0.6167 0.5286 0.5781 1.41e-18 7t8s:H, 7t8s:L, 7t8s:P
6 7t8s:B 78 60 0.5833 0.4487 0.5833 1.31e-13 7t8s:F, 7t8s:J, 7t8s:N
7 7sut:C 63 60 0.5000 0.4762 0.5000 1.54e-11 7sut:G
8 4lms:C 68 61 0.4667 0.4118 0.4590 5.14e-10
9 7t7u:C 70 60 0.4833 0.4143 0.4833 1.47e-09
10 7t7u:A 81 58 0.4000 0.2963 0.4138 1.70e-08
11 4lms:A 80 56 0.3167 0.2375 0.3393 3.00e-05
12 7ssf:A 72 51 0.3000 0.2500 0.3529 0.001 7ssf:C, 7ssf:E, 7ssf:G
13 7sut:A 78 47 0.2667 0.2051 0.3404 0.006 7sut:E
14 4lmx:E 66 54 0.3667 0.3333 0.4074 0.043 8el3:C, 8el3:I, 8el3:E, 8el3:L, 8el4:C, 8el4:E, 8el5:C, 8el5:I, 8el5:E, 8el5:L, 8el6:C, 8el6:E, 4lmx:A, 4lmx:G, 4lmx:I, 4lmx:K
15 7s96:A 63 51 0.2833 0.2698 0.3333 0.060 7s96:C, 7s97:C, 7t89:A, 7t89:C
16 4lm6:A 62 50 0.2500 0.2419 0.3000 0.26 4lm6:C
17 5hh7:A 192 23 0.1833 0.0573 0.4783 2.3
18 6hzf:A 860 40 0.2500 0.0174 0.3750 3.7 6hze:A, 6hze:B, 6hzf:B, 6hzg:A
19 8tdf:A 452 40 0.1833 0.0243 0.2750 6.9 8tdf:B, 8tdf:C, 8tdf:D, 8tdh:B, 8tdh:C, 8tdh:D, 8tdh:A
20 7aor:ab 1110 50 0.2500 0.0135 0.3000 7.0
21 5awp:A 596 35 0.1833 0.0185 0.3143 9.8 5awq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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