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BioLiP
>protein
SAETQMERKIIDFLRQNGKSIALTIAKEIGLDKSTVNRHLYNLQRSNQVFNSNEKPPVWDLM

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4kmf:A 62 62 1.0000 1.0000 1.0000 3.93e-42
2 4lb5:B 63 62 0.5323 0.5238 0.5323 3.64e-17 4lb5:A, 4lb6:B
3 4wcg:B 61 57 0.3226 0.3279 0.3509 7.44e-06 4wcg:A
4 3f21:A 67 58 0.2742 0.2537 0.2931 4.60e-05 2acj:B, 2acj:C, 2acj:D, 3f21:B, 3f21:C, 3f22:A, 3f22:B, 3f22:C, 3f23:A, 3f23:B, 3f23:C, 2gxb:A, 2gxb:B, 3irq:B, 3irq:A, 3irq:D, 3irq:C, 3irr:C, 3irr:D, 3irr:A, 3irr:B, 1qbj:A, 1qbj:B, 1qbj:C, 5zu1:C, 5zu1:A, 5zu1:B, 5zuo:B, 5zuo:C, 5zuo:D, 5zup:B, 5zup:C, 5zup:D
5 3eyi:B 67 56 0.3226 0.2985 0.3571 8.94e-05 3eyi:A, 4ka4:A, 4ka4:E, 4ka4:B, 4ka4:D
6 7c0i:B 67 40 0.1935 0.1791 0.3000 1.12e-04 7c0i:A, 7c0i:C
7 2acj:A 53 57 0.2419 0.2830 0.2632 0.001 5zuo:A, 5zup:A
8 5zu1:D 47 58 0.2742 0.3617 0.2931 0.003
9 2heo:A 59 57 0.2742 0.2881 0.2982 0.003 2heo:D, 1j75:A
10 1sfu:A 70 46 0.2097 0.1857 0.2826 0.011 1sfu:B
11 7r3g:B 236 52 0.3387 0.0890 0.4038 0.020 7r3g:A, 7r3h:B, 7r3h:A, 7r3i:A, 7r3i:B
12 2cyy:A 151 45 0.2258 0.0927 0.3111 0.11 2e1c:A, 2zny:A, 2zny:C, 2zny:E, 2zny:B, 2zny:D, 2zny:F, 2zny:H, 2zny:G, 2znz:A, 2znz:B, 2znz:C, 2znz:D, 2znz:E, 2znz:F, 2znz:G, 2znz:H
13 4eb5:C 138 32 0.2097 0.0942 0.4062 0.67 4eb5:D, 4eb7:C
14 8fe1:E 346 53 0.2419 0.0434 0.2830 0.81 5bkg:E, 8dn5:E, 7l31:E, 7mly:E, 7tu9:E
15 8q4d:D 373 39 0.2097 0.0349 0.3333 2.1 8b4h:A, 8b4h:B, 8b4h:C, 8b4h:D, 8q4d:A, 8q4d:B, 8q4d:C
16 8tnv:A 393 32 0.1774 0.0280 0.3438 2.2 8tnv:B
17 7pgn:B 438 17 0.1452 0.0205 0.5294 2.7 7pgm:B, 7pgn:A, 2wfx:B
18 2d5v:A 135 28 0.1613 0.0741 0.3571 2.9 2d5v:B, 8t0f:A, 8t11:A
19 6xrs:B 392 40 0.1935 0.0306 0.3000 5.2 6xrs:A, 6xrs:D, 6xrs:C
20 3ce2:A 595 26 0.1774 0.0185 0.4231 5.6
21 4omy:A 97 50 0.1935 0.1237 0.2400 8.3 4omy:B, 4omy:C, 4omy:D, 4on0:A, 4on0:B, 4on0:C, 4on0:D
22 8ahu:A 283 38 0.2097 0.0459 0.3421 9.1 7p7x:A, 8raf:A, 8rai:A, 8yrt:A, 8yru:A, 8yrv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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