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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RYRLFHPRREAIPMHMCPAKTIFPLINSNNLLVKTRNSWEDFTGRKEFDEDHPLPVVGSRLNGRTTQHKWNHWDQYLNPQ
ITQSIKDLTPTPEYVGMRCGHNMIKMGWMKIGGSWKYSRGYNDRRGQWQERKMTPRFMLAPRVSAGGPRNRYEGKLVFSP
LRLSKLLWAIDTGRINPNEVITLYHLRQANVVGEREIVWPGFVLISNGVRRVPYPIHIELQNASAESIRLIEEAGGSFTC
VYMTHEGLYQELHPEEYPIFMDQELPERRGLESLATNPSKRGWLTRWYEDSSKYAHPAAGRRYSHYLKPTLLPWHSYNTA

The query sequence (length=320) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6hiv:AP 352 350 0.9688 0.8807 0.8857 0.0 7aoi:AP, 6hix:AP, 6yxx:AP, 6yxy:AP
2 7aih:G 365 355 0.7531 0.6603 0.6789 2.61e-179 7am2:G, 7ane:G
3 6z1p:Aq 273 138 0.1250 0.1465 0.2899 6.66e-14
4 6xyw:Al 180 109 0.1062 0.1889 0.3119 8.01e-12
5 8a22:Aj 206 112 0.1125 0.1748 0.3214 2.14e-07 8apn:Aj, 8apo:Aj
6 7po4:M 269 162 0.1469 0.1747 0.2901 2.90e-07 7oi6:M
7 7odr:M 291 162 0.1469 0.1615 0.2901 3.63e-07 7a5f:M3, 7a5g:M3, 7a5h:M, 7a5i:M3, 7a5j:M, 7a5k:M3, 5aj4:BP, 8any:M, 6gaw:BP, 6gb2:BP, 6i9r:M, 3j7y:M, 3j9m:M, 8k2a:LO, 8k2b:LO, 7l08:M, 7l20:M, 7nqh:BP, 7nql:BP, 7nsh:BP, 7nsi:BP, 7nsj:BP, 6nu2:M, 6nu3:M, 7o9k:M, 7o9m:M, 7ods:M, 7odt:M, 7of0:M, 7of2:M, 7of3:M, 7of4:M, 7of5:M, 7of6:M, 7of7:M, 7og4:XM, 7oi7:M, 7oi8:M, 7oi9:M, 7oia:M, 7oib:M, 7oic:M, 7oid:M, 7oie:M, 8oin:BT, 8oiq:BT, 8oir:BT, 8oit:BT, 5ool:M, 5oom:M, 7pd3:M, 8pk0:M, 7qh6:M, 7qh7:M, 7qi4:M, 7qi5:M, 7qi6:M, 8qsj:M, 8qu1:M, 8qu5:M, 4v19:P, 6vlz:M, 6vmi:M, 8xt0:LO, 8xt1:LO, 8xt2:LO, 8xt3:LO, 6ydp:BP, 6ydw:BP, 6zm5:M, 6zm6:M, 6zs9:XM, 6zsa:XM, 6zsb:XM, 6zsc:XM, 6zsd:XM, 6zse:XM, 6zsg:XM
8 7pkt:k 210 118 0.1062 0.1619 0.2881 3.19e-06
9 4ce4:P 169 89 0.0906 0.1716 0.3258 8.09e-06
10 3j6b:J 220 156 0.1531 0.2227 0.3141 3.79e-05 5mrc:J, 5mre:J, 5mrf:J
11 6ywe:J 243 109 0.1062 0.1399 0.3119 0.013 6yws:J, 6ywv:J, 6ywx:J, 6ywy:J
12 4cns:D 479 59 0.0531 0.0355 0.2881 1.4 4cns:A, 4cns:B, 4cns:C
13 7rtm:A 571 38 0.0437 0.0245 0.3684 2.1 7rtm:B
14 6bum:B 363 32 0.0375 0.0331 0.3750 2.1 6bum:A, 6bum:C, 6bum:D, 6bun:A, 6bun:B, 6bun:C, 6bun:D, 6buo:A, 6buo:D, 6buo:B, 6buo:C, 6bup:A, 6bup:B, 6bup:C, 6bup:D, 6buq:A, 6buq:D, 6buq:B, 6buq:C, 6bur:A, 6bur:B, 6bur:C, 6bur:D, 6cwj:A, 6cwj:B, 6cwj:C, 6cwj:D
15 5ze3:B 443 168 0.1125 0.0813 0.2143 3.8 5ze3:A
16 7x2q:A 467 21 0.0281 0.0193 0.4286 9.8 7x2q:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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