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BioLiP
>protein
RVVTQNEIDRTIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYGGSSSNPGLPDMRGLFVRGSGRGSHL
TNPNVNGNDQFGKPRLGVGCTGGYVGEVQKQQMSYHKHAGGFGEYDDSGAFGNTRRSNFVGTRKGLDWDNRSYFTNDGYE
IDPASQRNSRYTLNRPELIGNETRPWNISLNYIIKVKE

The query sequence (length=198) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5iv5:O 526 198 0.9596 0.3612 0.9596 2.62e-144 5iv5:P, 5iv5:Q, 5iv5:l, 5iv5:m, 5iv5:n, 5iv5:AI, 5iv5:AJ, 5iv5:BA, 5iv5:DB, 5iv5:DC, 5iv5:DD, 5iv5:FE, 5iv5:FF, 5iv5:FG, 5iv5:HH, 5iv5:HI, 5iv5:HJ, 1ocy:A
2 1dpp:A 507 96 0.1414 0.0552 0.2917 0.93 1dpp:C, 1dpp:E, 1dpp:G
3 2xgf:A 216 66 0.1061 0.0972 0.3182 2.1 2xgf:B, 2xgf:C
4 4k6n:A 352 36 0.0606 0.0341 0.3333 2.7
5 3tto:A 1055 75 0.1162 0.0218 0.3067 9.0 3tto:B, 3tto:C, 3tto:D, 3ttq:A, 4ttu:A, 4tvc:A, 4tvd:A
6 6ifd:B 234 44 0.0556 0.0470 0.2500 9.5 6ifd:A, 6ifd:C
7 2ex8:A 456 39 0.0758 0.0329 0.3846 9.8 2ex6:A, 2ex9:A, 2exa:A, 2exb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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