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BioLiP
>protein
RVPGGKRTKELGLVVPIPEEDGLTDGQIAALFVVALVVLIAAVDLARSLYFGLQPNKFKTAKGKGSITPFMKRLIENGF

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8jjr:m 79 79 1.0000 1.0000 1.0000 4.29e-52
2 8jze:m 79 79 0.6962 0.6962 0.6962 5.71e-38 8jzf:m
3 8jw0:m 89 78 0.4304 0.3820 0.4359 2.60e-18
4 8wm6:M 30 28 0.1519 0.4000 0.4286 2.2 8wmj:M, 8wmv:M, 8wmw:M, 7y7b:M, 7y8a:M
5 2imr:A 380 35 0.1899 0.0395 0.4286 6.3
6 8d8j:d 660 39 0.1772 0.0212 0.3590 6.3 8d8k:d
7 6rxt:UD 772 52 0.2278 0.0233 0.3462 8.5 6rxu:UD, 6rxv:UD, 6rxx:UD, 6rxy:UD, 6rxz:UD
8 7z36:B 446 19 0.1139 0.0202 0.4737 9.1 6h3a:A, 6h3a:F, 6qaj:A, 6qaj:B, 6qu1:A, 2yvr:A, 2yvr:B, 7z36:A
9 6iih:A 446 19 0.1139 0.0202 0.4737 9.1 6iih:B, 6lb7:B, 6xqo:J
10 7cmh:B 458 41 0.1772 0.0306 0.3415 9.6 7b00:A, 7cmi:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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