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BioLiP
>protein
RTIVRFNRPFLMIIVDNFTWSIFFMSKVTNPKQA

The query sequence (length=34) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hgi:B 35 34 0.9706 0.9429 0.9706 1.38e-18 6ftp:B, 6hgf:B, 6hgg:B, 6hgj:B, 6hgk:B, 6hgl:B, 5om2:B, 5om3:B, 5om7:B
2 1as4:B 33 32 0.7941 0.8182 0.8438 2.94e-12
3 4c49:A 367 29 0.4706 0.0436 0.5517 1.41e-07 4bb2:A, 4bb2:B, 4c49:B, 4c49:C, 4c49:D, 2vdy:A, 2vdy:B
4 2v95:A 342 28 0.4118 0.0409 0.5000 2.64e-06
5 1hp7:A 376 30 0.4412 0.0399 0.5000 2.73e-05 7ael:AAA, 7api:A, 8api:A, 9api:A, 6i4v:A, 1iz2:A, 7npl:A, 8pi2:A, 4pyw:A
6 7npk:A 352 30 0.4118 0.0398 0.4667 1.67e-04
7 5hgc:A 373 28 0.3824 0.0349 0.4643 0.003
8 1jmj:A 397 35 0.4412 0.0378 0.4286 0.005
9 4aqh:B 383 25 0.2941 0.0261 0.4000 0.12 1a7c:A, 4aqh:A, 4aqh:C, 7aqf:A, 7aqg:A, 1dvm:A, 1dvm:C, 1dvm:D, 4g8o:D, 4g8r:A, 4g8r:B, 4ic0:A, 4ic0:C, 3q02:A, 3q02:B, 3q03:A, 3q03:B, 3r4l:A, 3ut3:B
10 8gxv:A 353 29 0.2941 0.0283 0.3448 0.13
11 1e03:L 423 31 0.3824 0.0307 0.4194 0.25 1azx:I, 1azx:L, 2b5t:I, 1br8:I, 1e03:I, 3evj:I, 3evj:L, 2gd4:I, 2gd4:C, 1jvq:I, 3kcg:I, 1lk6:I, 1nq9:I, 1nq9:L, 1r1l:I, 1sr5:A, 1tb6:I
12 4dy7:F 378 25 0.2941 0.0265 0.4000 0.59
13 5nd5:A 669 19 0.2647 0.0135 0.4737 1.6 5nd5:B
14 5log:A 222 28 0.3529 0.0541 0.4286 2.4 5lhm:A, 5log:B
15 4au2:C 338 26 0.2059 0.0207 0.2692 2.5
16 3zha:A 380 26 0.2059 0.0184 0.2692 2.5 4au2:A, 4au2:B, 4au2:D, 4au3:A, 4au3:B, 4au3:C, 4au3:D, 7bdu:A, 7bdu:B, 7bee:A, 7bee:B, 7bfi:A, 7bfi:C, 7bfi:D, 7bfi:B, 3zha:B, 3zha:C, 3zha:D, 3zha:K, 3zha:L, 3zha:P, 3zha:Q
17 4qq8:C 569 34 0.2941 0.0176 0.2941 2.6 2ag0:A, 2ag0:B, 2ag0:C, 2ag0:D, 2ag1:A, 2ag1:B, 2ag1:C, 2ag1:D, 3d7k:A, 3d7k:B, 3iae:A, 3iae:B, 3iaf:A, 3iaf:B, 3iaf:C, 3iaf:D, 4qpz:A, 4qpz:B, 4qpz:C, 4qpz:D, 4qpz:E, 4qpz:F, 4qpz:G, 4qpz:H, 4qq8:A, 4qq8:B, 4qq8:D, 2uz1:A, 2uz1:B, 2uz1:C, 2uz1:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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