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BioLiP
>protein
RTFLHAVDVVLDPDTAHPDLFLSEDRRSVRRCPFRHLGESVPDNPERFDSQPCVLGRESFASGKHYWEVEVENVIEWTVG
VCRDSVERKGEVLLIPQNGFWTLEMHKGQYRAVSSPDRILPLKESLCRVGVFLDYEAGDVSFYNMRDRSHIYTCPRSAFS
VPVRPFFRLGCEDSPIFICPALTGANGVTVPEEGLTLHR

The query sequence (length=199) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8igt:A 208 198 0.9950 0.9519 1.0000 2.24e-147 8jyc:A, 8jyc:B, 8jye:A, 8jye:B
2 8hjt:A 197 198 0.7940 0.8020 0.7980 5.31e-116 8hjt:B
3 8jya:B 191 183 0.4774 0.4974 0.5191 2.67e-59 8hjt:C, 8hjt:D, 8jy9:A, 8jy9:B, 8jyf:B
4 6j0k:A 191 177 0.4623 0.4817 0.5198 6.40e-56 6j0g:A, 6j0g:B, 6j0g:C, 6j0g:D, 6j0k:B
5 8ixv:A 187 183 0.4573 0.4866 0.4973 2.90e-55 8ize:A, 8izg:A, 6j06:A, 6j06:C, 6j06:B, 8jyc:C, 8jyc:D, 8jye:C, 8jye:D, 4n7u:A, 5zxk:A
6 8pd6:A 181 176 0.4422 0.4862 0.5000 7.01e-53
7 4cg4:C 376 189 0.4372 0.2314 0.4603 1.99e-50 4cg4:D, 4cg4:E, 4cg4:F
8 7ovx:A 174 176 0.3769 0.4310 0.4261 6.66e-40 8a5l:A, 8a5m:A, 8a5m:B, 8a8x:A, 8a8x:C, 7ow2:A, 7ow2:B, 7ow2:C, 7ow2:D, 8r5b:A, 8r5b:B, 8r5c:A, 7w0q:A, 7w0s:B, 7w0s:C, 7w0s:E, 7w0t:F, 7w0t:B, 7w0t:C, 7x6y:A, 7x6z:A, 7x70:A
9 7xt2:B 388 174 0.2613 0.1340 0.2989 5.01e-18 7xt2:A
10 4b3n:A 557 144 0.2462 0.0880 0.3403 3.84e-16 4b3n:B
11 7xyz:B 456 147 0.2111 0.0921 0.2857 2.33e-15 7xv2:A, 7xyy:A, 7xyy:B, 7xyz:A, 7xyz:C, 7xyz:D, 7xz0:A, 7xz0:B, 7xz1:A, 7xz1:B, 7xz2:A, 7xz2:B, 7xz2:C, 7xz2:D
12 7vyx:A 1211 53 0.0854 0.0140 0.3208 3.4 7vyx:B
13 4z7k:A 218 78 0.0905 0.0826 0.2308 6.6 4z7l:A, 4z7l:D, 4z7l:G
14 7z6f:E 581 52 0.0905 0.0310 0.3462 7.3 7atr:A, 8fsq:A, 8fsr:A, 8fss:A
15 4hea:3 756 50 0.0804 0.0212 0.3200 8.2 2fug:3, 2fug:C, 2fug:L, 2fug:U, 4hea:D, 6i0d:3, 6i0d:D, 6i1p:3, 6i1p:D, 3i9v:3, 3i9v:C, 3iam:3, 3iam:C, 3ias:3, 3ias:C, 3ias:L, 3ias:U, 3m9s:3, 3m9s:C, 6q8o:3, 6q8o:D, 6q8w:3, 6q8w:D, 6q8x:3, 6q8x:D, 6y11:3, 6y11:D, 2ybb:3, 6ziy:3, 6zjl:3, 6zjn:3, 6zjy:3
16 5ub4:B 279 65 0.0905 0.0645 0.2769 8.6 5ub4:A, 5ub6:A, 5ub6:B, 5ub7:A, 5ub7:B
17 6xyw:Ay 111 55 0.0804 0.1441 0.2909 9.0
18 2ihs:A 203 154 0.2010 0.1970 0.2597 9.7 2ihs:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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