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BioLiP
>protein
RTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPESRIQIWFQNRRARHPG

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6e8c:A 135 53 0.9815 0.3926 1.0000 7.14e-32 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
2 6e8c:A 135 48 0.4815 0.1926 0.5417 1.76e-12 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
3 8ejo:A 56 52 0.5185 0.5000 0.5385 4.23e-16 8ejo:B, 8ejp:A, 8ejp:B
4 1fjl:A 65 51 0.5556 0.4615 0.5882 1.21e-15 1fjl:B, 1fjl:C
5 8osb:E 62 51 0.4630 0.4032 0.4902 5.12e-13
6 3cmy:A 60 51 0.5000 0.4500 0.5294 6.79e-13
7 3a01:F 61 51 0.4815 0.4262 0.5098 7.51e-13 3a01:B, 3lnq:A
8 2lkx:A 68 51 0.4074 0.3235 0.4314 1.37e-10
9 9b8u:B 66 47 0.4259 0.3485 0.4894 1.72e-10 9b8u:A, 9b8u:C, 9b8u:D
10 5hod:A 61 51 0.4074 0.3607 0.4314 3.67e-09 5hod:D
11 4rdu:D 62 51 0.3704 0.3226 0.3922 2.03e-08 4rdu:A, 4xrs:I, 4xrs:G
12 1jgg:A 57 51 0.4259 0.4035 0.4510 2.39e-08 1jgg:B
13 1ig7:A 58 51 0.3889 0.3621 0.4118 4.08e-08
14 8eml:A 58 53 0.3889 0.3621 0.3962 6.61e-08 8eml:B
15 6m3d:C 108 51 0.4074 0.2037 0.4314 6.75e-08 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
16 6m3d:C 108 51 0.3889 0.1944 0.4118 1.84e-07 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
17 6es3:K 72 51 0.3889 0.2917 0.4118 4.61e-07 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
18 4qtr:C 57 51 0.4074 0.3860 0.4314 5.01e-07 4qtr:A, 4qtr:B, 4qtr:D
19 2me6:A 71 51 0.3519 0.2676 0.3725 6.76e-07
20 8pna:A 67 51 0.3148 0.2537 0.3333 7.64e-07 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
21 8ik5:C 67 51 0.4074 0.3284 0.4314 1.16e-06 8ike:C, 8ilw:C
22 2r5z:A 75 51 0.3889 0.2800 0.4118 7.00e-06 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
23 3a01:A 78 51 0.3519 0.2436 0.3725 1.26e-05 3a01:E
24 1b72:A 68 54 0.3519 0.2794 0.3519 3.18e-05
25 2h1k:B 60 51 0.3889 0.3500 0.4118 4.57e-05 2h1k:A
26 3rkq:A 58 51 0.3148 0.2931 0.3333 6.43e-05 3rkq:B
27 1zq3:P 68 52 0.3519 0.2794 0.3654 8.39e-05
28 1nk2:P 77 51 0.3519 0.2468 0.3725 1.08e-04 1nk3:P
29 1ahd:P 68 51 0.3704 0.2941 0.3922 1.28e-04
30 5zjr:A 64 54 0.3519 0.2969 0.3519 1.34e-04 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
31 4uus:A 67 51 0.3519 0.2836 0.3725 1.45e-04 4uus:E
32 1lfu:P 82 32 0.2407 0.1585 0.4062 1.82e-04 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
33 4cyc:A 66 51 0.3519 0.2879 0.3725 1.91e-04 1b8i:A
34 1puf:A 77 51 0.3519 0.2468 0.3725 3.47e-04 2lp0:A
35 5flv:M 229 45 0.2963 0.0699 0.3556 4.05e-04 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
36 2ld5:A 67 53 0.3148 0.2537 0.3208 4.80e-04
37 4rbo:A 55 50 0.2222 0.2182 0.2400 5.57e-04 4rbo:D
38 5eea:G 63 42 0.2778 0.2381 0.3571 0.002 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
39 4egc:A 539 36 0.2407 0.0241 0.3611 0.004
40 1le8:A 53 51 0.2222 0.2264 0.2353 0.008 1akh:A, 1yrn:A
41 3d1n:I 150 49 0.2963 0.1067 0.3265 0.043 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
42 8bx1:A 127 36 0.2037 0.0866 0.3056 0.33
43 5wc9:A 136 53 0.2778 0.1103 0.2830 0.45 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
44 3l1p:A 147 36 0.2037 0.0748 0.3056 0.50 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
45 4xrm:B 64 31 0.2037 0.1719 0.3548 0.57 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
46 8g8e:X 140 30 0.1667 0.0643 0.3000 0.83 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
47 1gt0:C 137 52 0.2222 0.0876 0.2308 2.2 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
48 5b16:A 722 37 0.2778 0.0208 0.4054 3.3
49 6bfy:A 439 33 0.2593 0.0319 0.4242 4.0 6bfy:B, 6bfy:C, 6bfy:F, 6bfy:D, 6bfy:E, 6bfz:A, 6bfz:B, 6bfz:E, 6bfz:F, 6bfz:D, 6bfz:C, 6d3q:A, 6d3q:C, 6d3q:B, 6d3q:E, 6d3q:F, 6d3q:D, 1e9i:A, 1e9i:B, 1e9i:C, 1e9i:D, 2fym:A, 2fym:C, 2fym:D, 2fym:F, 3h8a:A, 3h8a:B, 3h8a:C, 3h8a:D, 6npf:A, 6npf:B, 6npf:C, 6npf:D, 6npf:F, 6npf:E, 5ohg:A, 5ohg:B, 5ohg:H, 5ohg:I
50 6lxe:A 768 37 0.2778 0.0195 0.4054 4.6
51 7ly7:A 908 51 0.2963 0.0176 0.3137 5.4
52 6lxd:A 918 37 0.2778 0.0163 0.4054 6.3 9asm:A, 9asn:A, 9aso:A, 9asp:A, 9asq:A, 6v5b:A, 6v5c:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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