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BioLiP
>protein
RSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNVDYHMNSVPIQQEILVLRREPPPNSFRLEKILVSVG
CTCVTPIVH

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5vb9:A 108 90 0.9663 0.7963 0.9556 1.45e-59 7ama:A, 7ama:B, 7amg:A, 7amg:B, 7amg:C, 7amg:D, 8cdg:A, 8cdg:B, 8dyf:A, 8dyf:B, 8dyg:A, 8dyg:B, 8dyh:A, 8dyh:B, 8dyi:A, 8dyi:B, 5hhv:A, 5hhx:A, 5hi3:A, 5hi3:B, 5hi4:A, 5hi4:B, 5hi5:A, 5hi5:B, 8usr:A, 8usr:B, 8usr:D, 5vb9:B
2 8uss:A 107 89 0.9551 0.7944 0.9551 3.86e-58
3 3jvf:B 104 88 0.5955 0.5096 0.6023 9.64e-32
4 8opp:A 670 42 0.1461 0.0194 0.3095 0.38
5 8opt:A 783 42 0.1461 0.0166 0.3095 0.40 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
6 6z1p:AR 274 55 0.1910 0.0620 0.3091 1.3
7 6ahr:B 774 44 0.1685 0.0194 0.3409 1.4 6ahu:B
8 8htu:H 95 18 0.0899 0.0842 0.4444 2.3 7ksq:H, 7kux:H, 6l35:H, 7xqp:H
9 7wld:K 331 52 0.1573 0.0423 0.2692 3.4 8imx:K, 8imy:K, 7w72:K
10 8jjm:A 484 43 0.1573 0.0289 0.3256 5.4 8jjm:B
11 4pu5:A 438 20 0.1011 0.0205 0.4500 7.1
12 6wb7:A 296 52 0.1685 0.0507 0.2885 7.8 6wb7:B, 6wb7:C, 6wb7:D
13 1ygp:A 858 18 0.0899 0.0093 0.4444 9.4 1ygp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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