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BioLiP
>protein
RRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEKV

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3a01:F 61 61 1.0000 1.0000 1.0000 4.92e-40 3a01:B, 3lnq:A
2 8osb:E 62 59 0.7377 0.7258 0.7627 1.45e-29
3 3cmy:A 60 58 0.7213 0.7333 0.7586 5.63e-28
4 1fjl:A 65 58 0.6885 0.6462 0.7241 2.22e-26 1fjl:B, 1fjl:C
5 2lkx:A 68 60 0.6393 0.5735 0.6500 7.69e-22
6 9b8u:B 66 50 0.5410 0.5000 0.6600 1.78e-19 9b8u:A, 9b8u:C, 9b8u:D
7 8ejo:A 56 54 0.5082 0.5536 0.5741 1.19e-15 8ejo:B, 8ejp:A, 8ejp:B
8 8pna:A 67 61 0.4262 0.3881 0.4262 4.96e-14 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
9 4rdu:D 62 57 0.4098 0.4032 0.4386 1.53e-13 4rdu:A, 4xrs:I, 4xrs:G
10 2me6:A 71 57 0.4590 0.3944 0.4912 1.65e-13
11 6e8c:A 135 54 0.4590 0.2074 0.5185 3.55e-13 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
12 6e8c:A 135 55 0.3934 0.1778 0.4364 1.95e-11 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
13 2h1k:B 60 59 0.4918 0.5000 0.5085 1.19e-12 2h1k:A
14 3a01:A 78 58 0.4262 0.3333 0.4483 4.82e-12 3a01:E
15 8eml:A 58 57 0.4426 0.4655 0.4737 5.74e-12 8eml:B
16 6es3:K 72 59 0.4426 0.3750 0.4576 6.06e-12 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
17 1jgg:A 57 57 0.4754 0.5088 0.5088 1.07e-11 1jgg:B
18 2r5z:A 75 59 0.4590 0.3733 0.4746 1.76e-11 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
19 5hod:A 61 54 0.4262 0.4262 0.4815 2.07e-11 5hod:D
20 1ahd:P 68 61 0.4590 0.4118 0.4590 2.85e-11
21 1ig7:A 58 57 0.3934 0.4138 0.4211 9.18e-11
22 4uus:A 67 55 0.4262 0.3881 0.4727 1.36e-10 4uus:E
23 4cyc:A 66 55 0.4262 0.3939 0.4727 3.76e-10 1b8i:A
24 1b72:A 68 57 0.4262 0.3824 0.4561 1.04e-09
25 1zq3:P 68 52 0.3770 0.3382 0.4423 4.13e-09
26 6m3d:C 108 56 0.3770 0.2130 0.4107 6.01e-09 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
27 6m3d:C 108 53 0.3443 0.1944 0.3962 6.80e-08 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
28 5zjr:A 64 54 0.3934 0.3750 0.4444 6.33e-08 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
29 3rkq:A 58 54 0.3443 0.3621 0.3889 1.12e-07 3rkq:B
30 4qtr:C 57 54 0.3770 0.4035 0.4259 2.30e-07 4qtr:A, 4qtr:B, 4qtr:D
31 1puf:A 77 60 0.4098 0.3247 0.4167 3.77e-07 2lp0:A
32 8ik5:C 67 57 0.3770 0.3433 0.4035 4.01e-07 8ike:C, 8ilw:C
33 1nk2:P 77 54 0.3770 0.2987 0.4259 1.20e-06 1nk3:P
34 2ld5:A 67 57 0.3115 0.2836 0.3333 1.50e-06
35 5eea:G 63 57 0.3115 0.3016 0.3333 4.88e-06 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
36 5flv:M 229 52 0.3279 0.0873 0.3846 5.36e-06 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
37 4rbo:A 55 50 0.2951 0.3273 0.3600 6.27e-05 4rbo:D
38 1lfu:P 82 35 0.2295 0.1707 0.4000 1.75e-04 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
39 1le8:A 53 38 0.2459 0.2830 0.3947 5.88e-04 1akh:A, 1yrn:A
40 3d1n:I 150 52 0.2787 0.1133 0.3269 0.009 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
41 4egc:A 539 41 0.2459 0.0278 0.3659 0.010
42 8g8e:X 140 57 0.2787 0.1214 0.2982 0.010 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
43 3l1p:A 147 57 0.2787 0.1156 0.2982 0.026 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
44 8bx1:A 127 42 0.2295 0.1102 0.3333 0.033
45 1gt0:C 137 57 0.3279 0.1460 0.3509 0.082 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
46 5wc9:A 136 49 0.2459 0.1103 0.3061 0.35 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
47 4j19:A 77 56 0.2623 0.2078 0.2857 0.40 4j19:B
48 5u1e:A 321 50 0.2787 0.0530 0.3400 0.64 5tyq:A, 5u0n:A, 5u0t:A, 5u18:A, 5u19:A, 5u1i:A, 5u4t:A
49 5g5y:A 494 33 0.1967 0.0243 0.3636 0.94 5g5y:B, 5g5z:A, 5g5z:B, 5g5z:C, 5g5z:D, 5g60:A, 5g60:B, 5g60:C, 5g60:D, 5g61:A, 5g61:B, 5g61:C, 5g61:D, 5g62:A, 5g62:B
50 4xrm:B 64 32 0.2131 0.2031 0.4062 2.2 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
51 7xrc:C 134 40 0.2295 0.1045 0.3500 2.6 2xsd:C
52 2r6f:A 899 42 0.2131 0.0145 0.3095 4.5
53 7rhg:A 454 36 0.2131 0.0286 0.3611 4.6 7lft:A, 7lft:B, 7lft:C, 7lft:D, 7lfw:A, 7lfw:B, 7lfw:C, 7lfw:D, 7lfx:A, 7lfx:B, 7lfx:C, 7lfx:D, 7lfy:A, 7lfy:B, 7lfy:C, 7lfy:D, 7lg1:A, 7lg1:B, 7lg1:C, 7lg1:D, 7rhg:C, 7rhg:D, 7rhh:A, 7rhh:C, 7rhh:D, 7rhi:A, 7rhi:C, 7rhi:D, 7rhj:A, 7rhj:C, 7rhj:D, 7rhk:C, 7rhk:A, 7rhk:D
54 2r6f:B 879 42 0.2131 0.0148 0.3095 5.1
55 3uwx:A 945 42 0.2131 0.0138 0.3095 5.5
56 6nd4:N 678 57 0.2459 0.0221 0.2632 5.5 7ajt:UD, 7aju:UD, 7d4i:A4, 7d5s:A4, 7d63:A4, 6ke6:A4, 6lqp:A4, 6lqq:A4, 6lqr:A4, 6lqs:A4, 6lqt:A4, 6lqu:A4, 6lqv:A4, 7suk:LN, 5wlc:LN, 6zqa:UD, 6zqb:UD, 6zqc:UD, 6zqd:UD
57 8rf0:A 2780 26 0.1639 0.0036 0.3846 6.8 8rfe:A, 8rfg:A
58 5ho2:A 803 23 0.1475 0.0112 0.3913 7.1 5ho0:A, 5ho9:A, 5ho9:B, 5hof:A, 5hon:A, 5hon:B, 5hp6:A
59 6vr8:I 482 44 0.2295 0.0290 0.3182 7.5 7ufp:I
60 3lvq:E 420 24 0.1475 0.0214 0.3750 9.2 2b0o:E, 2b0o:F, 2b0o:G, 2b0o:H, 3lvr:E
61 8u0w:A 1099 45 0.1639 0.0091 0.2222 9.8
62 8u3k:A 1150 45 0.1639 0.0087 0.2222 9.9 9ezy:A, 8u3k:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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