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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RRRRIVVAMTGATGAMLGIKVLIALRRLNVETHLVMSKWAEATIKYETDYHPSNVRALADYVHNINDMAAPVSSGSFRAD
GMIVVPCSMKTLAAIHSGFCDDLISRTADVMLKERRRLVLVARETPLSEIHLRNMLEVTRAGAVIFPPVPAFYIKAGSIE
DLIDQSVGRMLDLFDLDTGDFERWNGW

The query sequence (length=187) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6qlg:A 188 187 1.0000 0.9947 1.0000 9.35e-139 6qlg:C, 6qlg:B, 6qlg:E, 6qlg:D, 6qlg:F
2 1sbz:D 185 184 0.5615 0.5676 0.5707 1.02e-71 1sbz:A, 1sbz:B, 1sbz:C
3 6m8t:A 189 182 0.4599 0.4550 0.4725 5.83e-56 6m8u:A
4 6m8v:A 183 182 0.4171 0.4262 0.4286 8.31e-51
5 6qlh:A 208 197 0.4492 0.4038 0.4264 2.06e-47 6qli:A, 6qlj:A, 6qlk:A, 6qll:A, 6qlv:A, 6qlv:B, 6qlv:C, 6qlv:D, 6qlv:H, 6qlv:E, 6qlv:F, 6qlv:K, 6qlv:G, 6qlv:I, 6qlv:J, 6qlv:L, 4zaf:A, 4zag:A, 4zal:A, 4zan:A, 4zav:A, 4zaw:A, 4zax:A, 4zay:A, 4zaz:A, 3zqu:A
6 7km3:F 190 190 0.4118 0.4053 0.4053 2.93e-40 7km2:L, 7km2:D, 7km2:I, 7km2:A, 7km2:B, 7km2:K, 7km2:C, 7km2:E, 7km2:J, 7km2:F, 7km2:G, 7km2:H, 7km3:L, 7km3:D, 7km3:I, 7km3:A, 7km3:B, 7km3:G, 7km3:K, 7km3:C, 7km3:E, 7km3:H, 7km3:J
7 4rhe:B 203 196 0.3850 0.3547 0.3673 1.44e-37 4rhe:A, 4rhe:E, 4rhe:C, 4rhe:D, 4rhe:F
8 1e20:A 185 97 0.1444 0.1459 0.2784 0.012 1mvl:A, 1mvn:A
9 1qzu:A 160 107 0.1551 0.1812 0.2710 0.022 1qzu:B, 1qzu:C, 1qzu:D
10 5tth:A 671 76 0.1070 0.0298 0.2632 0.21 6d14:A, 7exp:A, 4ipe:A, 4ivg:A, 4iyn:A, 4j0b:A, 4mli:A, 4mli:C, 4mls:A, 5tvu:A, 5tvw:A, 5tvx:A
11 7u8v:A 454 76 0.1016 0.0419 0.2500 0.24 7u8w:A, 7u8x:A, 7ulk:B, 5y3n:A
12 7c05:A 435 76 0.1016 0.0437 0.2500 0.24 7c7c:A, 7u8u:A, 7u8u:B, 7ulk:A, 5y3o:A, 4z1f:A, 4z1g:A, 4z1h:A
13 7kcl:B 614 80 0.1070 0.0326 0.2500 0.29 7c04:A, 7c7b:A, 5f5r:A, 5f5r:B, 5hph:A, 5hph:B, 7kck:A, 7kck:B, 7kcl:A, 7kcm:A, 7kcm:B, 7klu:A, 7klu:B, 7klu:D, 7klu:C, 7klv:A, 7klv:B, 6xg6:A, 6xg6:B, 4z1i:A, 4z1i:B, 4z1i:C, 4z1i:D
14 3qjg:A 171 73 0.1070 0.1170 0.2740 0.72 3qjg:C, 3qjg:B, 3qjg:D, 3qjg:E, 3qjg:F, 3qjg:G, 3qjg:I, 3qjg:H, 3qjg:J, 3qjg:L, 3qjg:K
15 6eoa:A 193 25 0.0642 0.0622 0.4800 0.91
16 7znn:B 559 38 0.0695 0.0233 0.3421 1.3 7zn7:B
17 5tth:B 621 76 0.1123 0.0338 0.2763 2.4 6d14:B, 7exp:B, 4ipe:B, 4iyn:B, 4j0b:B, 5tvu:B, 5tvw:B, 5tvx:B
18 6tgv:C 389 167 0.2299 0.1105 0.2575 2.7 8ow5:A, 8ow5:B, 8ow5:C, 8ow5:D, 8owb:A, 8owb:B, 8owb:C, 8owb:D, 8owp:A, 8owp:B, 8owp:C, 8owp:D, 8owq:A, 8owq:B, 8owq:C, 8owq:D, 8owr:A, 8owr:C, 8owr:D, 4qji:A, 4qji:B, 6tgv:A, 6tgv:B, 6tgv:D, 6th2:A, 6th2:C, 6thc:A, 6thc:B, 6thc:C, 6thc:D
19 2f5x:B 300 76 0.1070 0.0667 0.2632 4.7 2f5x:A, 2f5x:C
20 2qa5:B 234 107 0.1444 0.1154 0.2523 4.7 2qa5:A, 2qag:A, 2qnr:A
21 5duf:A 245 96 0.1337 0.1020 0.2604 8.9 5dtw:A, 5dtw:D, 5du4:A, 5du6:A, 5du6:B, 5du6:C, 5du8:A, 5du8:B, 5du8:C, 5duc:A, 5duc:B, 5duc:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218