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BioLiP
>protein
RRKKGGWFGKHRGQGGSNPKFENIAEGLRALLARSHVERTTDEGTWVAGVFVYGGSKTSLYNLRRGTALAIPQCRLTPLS
RLPFGMAPGPGPQPGPLRESIVCYFMVFLQTHIFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVDLPPWFPPMVEGA

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7u1t:A 176 156 0.9750 0.8864 1.0000 4.41e-115 1b3t:A, 1b3t:B, 8dlf:A, 8dlf:B, 8dlf:C, 8dlf:D, 6npi:B, 6npm:B, 6npp:B, 6pw2:A, 6pw2:B, 6pw2:C, 6pw2:D, 6pw2:I, 6pw2:J, 6pw2:K, 6pw2:L, 5t7x:A, 5t7x:B, 7u1t:B, 7u1t:C, 7u1t:D, 6vh6:B
2 8fnv:A 770 23 0.0688 0.0143 0.4783 0.42 8fnv:B, 8fnv:C, 8fnv:D, 8fnv:E, 8fnv:F, 8fnv:G, 8fnv:H, 8fnv:I, 8fnv:J, 8fnv:K, 8fnv:L, 8fnw:A, 8fnw:B, 8fnw:C, 8fnw:D, 8fnw:E, 8fnw:F, 8fnw:G, 8fnw:H, 8fnw:I, 8fnw:J, 8fnw:K, 8fnw:L
3 7exf:B 719 93 0.1437 0.0320 0.2473 1.4 7exf:A, 7exg:B, 7exg:A, 7exh:B, 7exh:A, 7exj:A, 7exj:B, 7exq:A, 7exq:B, 7exr:A, 7exr:B
4 6ncz:C 589 26 0.0875 0.0238 0.5385 2.2 6ncz:A, 6ncz:B, 6ncz:D, 6ncz:E, 6ncz:F
5 8bao:A 368 95 0.1437 0.0625 0.2421 7.3 8bao:B
6 1ibj:A 380 62 0.1125 0.0474 0.2903 8.8 1ibj:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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