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BioLiP
>protein
RRIRRERNKMAAAKSRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2wt7:A 63 53 0.9811 0.8254 0.9811 1.57e-29 1a02:F, 1fos:E, 1fos:G, 1s9k:D
2 5vpe:A 67 46 0.6604 0.5224 0.7609 6.73e-12 5vpe:C, 5vpf:A, 5vpf:C
3 7x5e:B 106 40 0.3208 0.1604 0.4250 0.10 7x5e:F, 7x5f:B, 7x5f:F, 7x5g:B, 7x5g:F
4 1t2k:D 61 42 0.2642 0.2295 0.3333 0.12
5 5t01:A 62 47 0.3396 0.2903 0.3830 0.50 1a02:J, 1fos:F, 1fos:H, 5fv8:D, 2h7h:A, 2h7h:B, 1jnm:A, 1jnm:B, 1s9k:E, 5t01:B
6 7mq8:LR 773 32 0.2264 0.0155 0.3750 1.2 7mq9:LR, 7mqa:LR
7 6pre:A 386 31 0.1698 0.0233 0.2903 3.2 2i58:A, 2i58:B, 6pql:A, 6pql:B, 6pql:C, 6pql:D, 6pre:B, 6pre:C, 6pre:D, 6prg:A, 6prg:B
8 1h88:B 71 63 0.4340 0.3239 0.3651 5.4 2e42:A, 2e42:B, 2e43:A, 2e43:B, 1gtw:A, 1gtw:B, 1gu4:A, 1gu4:B, 1gu5:A, 1gu5:B, 1h88:A, 1h89:A, 1h89:B, 1h8a:A, 1h8a:B, 1hjb:A, 1hjb:B, 1hjb:D, 1hjb:E, 1io4:A, 1io4:B, 8k8d:A, 8k8d:B, 7l4v:A, 7l4v:B, 6mg1:A, 6mg1:B, 6mg2:A, 6mg2:B, 6mg3:A, 6mg3:B, 7upz:A, 7upz:B
9 8k8c:A 60 17 0.1887 0.1667 0.5882 6.0 8k8c:B, 1nwq:A, 1nwq:C
10 1wao:1 471 40 0.2642 0.0297 0.3500 7.1 2bug:A, 8gae:E, 8gft:E, 3h60:A, 3h60:B, 3h61:A, 3h61:D, 3h62:C, 3h62:B, 3h63:A, 3h63:C, 3h64:A, 3h64:D, 3h66:A, 3h66:B, 3h67:A, 3h67:D, 3h68:A, 3h68:D, 3h69:A, 3h69:D, 5hpe:A, 4ja7:A, 4ja9:A, 1s95:A, 1s95:B, 5ui1:A, 5ui1:B, 5ui1:C, 5ui1:D, 1wao:2, 1wao:3, 1wao:4, 5wg8:A, 4zvz:A, 4zvz:B, 4zvz:C, 4zvz:D, 4zx2:A
11 7d3e:C 1380 22 0.1887 0.0072 0.4545 7.2 7d3e:A, 7d3f:C, 7d3f:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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