Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RQKYVSNKAAPLQYPLRKLNSEAGKVVPGWGTAPLMGIMLIALLLFILTILQLYNGTVIVEGIDV

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8eqm:H 65 65 1.0000 1.0000 1.0000 4.58e-42 8eqm:h
2 6j3y:H 66 50 0.4462 0.4394 0.5800 1.10e-17 6j3y:h, 6j3z:H, 6j3z:h, 6j40:H, 6j40:h, 8j5k:H, 8j5k:h, 6jlu:H, 6jlu:h, 7vd5:H, 7vd5:h
3 8wql:HD 64 50 0.4308 0.4375 0.5600 2.35e-15 8wql:HE, 8wql:H1, 8wql:h1, 8wql:hD, 8wql:hE
4 7oui:H 60 50 0.4000 0.4333 0.5200 3.31e-14 3jcu:H, 3jcu:h, 5mdx:H, 5mdx:h, 7oui:h
5 7pi0:H 67 54 0.4154 0.4030 0.5000 5.75e-14 7pi0:h, 7pi5:H, 7pi5:h, 7pin:H, 7pin:h, 7pin:H1, 7pin:h1, 7piw:H, 7piw:h, 7piw:H1, 7piw:h1, 7pnk:H, 7pnk:h
6 8c29:H 62 58 0.4154 0.4355 0.4655 1.25e-13 8c29:h
7 8kde:H 73 56 0.4000 0.3562 0.4643 3.71e-13 6kac:H, 6kac:h, 6kad:H, 6kad:h, 6kaf:H, 6kaf:h, 8r2i:H, 8zee:H
8 7y5e:HL 66 50 0.4462 0.4394 0.5800 1.07e-12 8wb4:H, 8wb4:h, 8xlp:h, 8xlp:H, 8xr6:H, 8xr6:h, 7y5e:H6, 7y5e:h6, 7y5e:hL, 7y7a:H9, 7y7a:h9, 7y7a:hE, 7y7a:HE, 7y7a:HO, 7y7a:hO, 7y7a:HZ, 7y7a:hZ, 7y7a:Hm, 7y7a:hm
9 8iwh:H 65 50 0.4462 0.4462 0.5800 1.71e-12 8iwh:h
10 7n8o:H 63 50 0.4615 0.4762 0.6000 1.76e-12 7n8o:h, 7rcv:H, 7rcv:h, 8tow:H, 8tow:h, 6wj6:H
11 8bd3:H 67 55 0.3846 0.3731 0.4545 1.85e-12 8bd3:h
12 5xnl:H 60 50 0.3692 0.4000 0.4800 3.60e-12 5xnl:h, 5xnm:H, 5xnm:h, 6yp7:h, 6yp7:H
13 4yuu:h1 62 50 0.4308 0.4516 0.5600 8.13e-12 4yuu:H1, 4yuu:H2, 4yuu:h2
14 6dhe:H 65 50 0.4308 0.4308 0.5600 4.97e-11 3a0b:H, 3a0b:h, 3a0h:H, 3a0h:h, 2axt:H, 2axt:h, 5b5e:H, 5b5e:h, 5b66:H, 5b66:h, 7cji:H, 7cji:h, 7cjj:H, 7cjj:h, 7cou:H, 7cou:h, 7czl:H, 7czl:h, 7d1t:H, 7d1t:h, 7d1u:H, 7d1u:h, 6dhe:h, 6dhf:H, 6dhf:h, 6dhg:H, 6dhg:h, 6dhh:H, 6dhh:h, 6dho:H, 6dho:h, 6dhp:H, 6dhp:h, 7dxa:h, 7dxh:h, 5e79:H, 5e79:h, 5e7c:H, 5e7c:h, 7eda:H, 9evx:H, 9evx:h, 8ez5:H, 8ez5:h, 8f4c:H, 8f4c:h, 8f4d:H, 8f4d:h, 8f4e:H, 8f4e:h, 8f4f:H, 8f4f:h, 8f4g:H, 8f4g:h, 8f4h:H, 8f4h:h, 8f4i:H, 8f4i:h, 8f4j:H, 8f4j:h, 8f4k:H, 8f4k:h, 4fby:H, 4fby:W, 8gn0:H, 8gn0:h, 8gn1:H, 8gn1:h, 8gn2:H, 8gn2:h, 5gth:H, 5gth:h, 5gti:H, 5gti:h, 5h2f:H, 5h2f:h, 4il6:H, 4il6:h, 8ir5:H, 8ir5:h, 8ir6:H, 8ir6:h, 8ir7:H, 8ir7:h, 8ir8:H, 8ir8:h, 8ir9:H, 8ir9:h, 8ira:H, 8ira:h, 8irb:H, 8irb:h, 8irc:H, 8irc:h, 8ird:H, 8ird:h, 8ire:H, 8ire:h, 8irf:H, 8irf:h, 8irg:H, 8irg:h, 8irh:H, 8irh:h, 8iri:H, 8iri:h, 4ixq:H, 4ixq:h, 4ixr:H, 4ixr:h, 6jlj:H, 6jlj:h, 6jlk:H, 6jlk:h, 6jll:H, 6jll:h, 6jlm:H, 6jlm:h, 6jln:H, 6jln:h, 6jlo:H, 6jlo:h, 6jlp:H, 6jlp:h, 5kaf:H, 5kaf:h, 5kai:H, 5kai:h, 3kzi:H, 5mx2:H, 5mx2:h, 7nho:H, 7nhp:H, 7nhq:H, 4pbu:H, 4pbu:h, 4pj0:H, 4pj0:h, 7rf1:H, 7rf1:h, 7rf2:H, 7rf2:h, 7rf3:H, 7rf3:h, 7rf4:H, 7rf4:h, 7rf5:H, 7rf5:h, 7rf6:H, 7rf6:h, 7rf7:H, 7rf7:h, 7rf8:H, 7rf8:h, 4rvy:H, 4rvy:h, 1s5l:H, 1s5l:h, 5tis:H, 5tis:h, 4tnh:H, 4tnh:h, 4tni:H, 4tni:h, 4tnj:H, 4tnj:h, 4tnk:H, 4tnk:h, 4ub6:H, 4ub6:h, 4ub8:H, 4ub8:h, 5v2c:H, 5v2c:h, 4v62:AH, 4v62:BH, 4v82:AH, 4v82:BH, 6w1o:H, 6w1o:h, 6w1p:H, 6w1p:h, 6w1q:H, 6w1q:h, 6w1r:H, 6w1r:h, 6w1t:H, 6w1t:h, 6w1u:H, 6w1u:h, 6w1v:H, 6w1v:h, 5ws5:H, 5ws5:h, 5ws6:H, 5ws6:h, 3wu2:H, 3wu2:h, 7yq2:H, 7yq2:h, 7yq7:H, 7yq7:h, 5zzn:H, 5zzn:h
15 7ymi:H 68 45 0.3538 0.3382 0.5111 9.66e-10 7ymi:h, 7ymm:1H, 7ymm:2H, 7ymm:3H, 7ymm:4H
16 4l8f:D 287 38 0.2308 0.0523 0.3947 8.5 4l8f:B, 4l8w:I, 4l8w:G
17 4nmc:A 941 54 0.2769 0.0191 0.3333 8.8
18 7na0:A 981 54 0.2769 0.0183 0.3333 9.0 7na0:B, 4nm9:A, 4nm9:B, 4nma:A, 4nma:B, 4nmb:A, 4nmb:B, 4nmc:B, 4nmd:A, 4nmd:B, 4nme:A, 4nme:B, 4nmf:A, 4nmf:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218