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BioLiP
>protein
RQKKDNHNLIERRRRFNINDRIKELGTLIPKSDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKL

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7d8t:A 199 72 0.9859 0.3518 0.9722 7.88e-44 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
2 7f09:C 67 56 0.6479 0.6866 0.8214 3.66e-26
3 1am9:C 82 61 0.3521 0.3049 0.4098 1.85e-09 1am9:D, 1am9:A, 1am9:B
4 8ia3:E 111 60 0.3521 0.2252 0.4167 6.24e-08 8ia3:A, 8ia3:B, 8ia3:F
5 8ow1:B 116 54 0.3239 0.1983 0.4259 1.97e-07 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
6 7f2f:B 94 61 0.3380 0.2553 0.3934 6.99e-06 7f2f:A
7 1an4:A 65 57 0.3239 0.3538 0.4035 8.41e-06 1an4:B
8 8osk:M 316 53 0.2817 0.0633 0.3774 1.65e-05 4h10:B, 8osl:M, 8osl:O
9 8hov:A 87 74 0.3099 0.2529 0.2973 1.99e-05 8hov:C, 8hov:B, 8hov:D, 8hov:E, 8hov:F
10 5nj8:D 134 55 0.2817 0.1493 0.3636 3.94e-04
11 7xi4:A 283 71 0.3099 0.0777 0.3099 4.06e-04 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
12 4zpr:A 235 68 0.3239 0.0979 0.3382 7.73e-04
13 2ypa:A 67 46 0.2535 0.2687 0.3913 8.05e-04 2ypb:A
14 1a0a:A 63 58 0.2535 0.2857 0.3103 0.002 1a0a:B
15 7xi3:A 287 53 0.2535 0.0627 0.3396 0.002
16 8osl:N 290 52 0.2394 0.0586 0.3269 0.009 4h10:A, 8osk:N, 8osl:P
17 5i50:B 96 58 0.2676 0.1979 0.3276 0.011 5i50:A, 1nkp:A, 1nkp:D
18 5eyo:C 88 54 0.2254 0.1818 0.2963 0.022 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
19 1hlo:A 80 54 0.2394 0.2125 0.3148 0.053
20 5gnj:B 77 50 0.2113 0.1948 0.3000 0.24 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
21 3bts:B 390 31 0.1690 0.0308 0.3871 0.90 3bts:A
22 6ncf:B 676 71 0.3099 0.0325 0.3099 1.9 6ncf:A, 6ncf:C, 6ncf:D, 3o8y:A, 3o8y:B, 7ttk:A, 7ttk:B, 7ttl:A, 7ttl:D, 3v92:B, 3v92:A, 3v98:A, 3v98:B
23 9ctq:D 376 19 0.1127 0.0213 0.4211 2.1 9ctq:E, 9ctq:C, 9ctq:B, 9ctq:A, 9ctr:B, 9ctr:A, 9ctr:C, 9ctr:E, 9ctr:D, 9cts:B, 9cts:E, 9cts:D, 9cts:A, 9cts:C, 9ctt:D, 9ctt:B, 9ctt:E, 9ctt:A, 9ctt:C, 8d1i:D, 8d1i:B, 8d1i:E, 8d1i:A, 8d1i:C, 8d1j:A, 8d1j:C, 8d1j:B, 8d1j:D, 8d1j:E, 8d1k:D, 8d1k:B, 8d1k:A, 8d1k:E, 8d1k:C, 8d1l:B, 8d1l:C, 8d1l:A, 8d1l:D, 8d1l:E, 8d1o:E, 8d1o:A, 8d1o:B, 8d1o:C, 8d1o:D
24 1nlw:A 79 58 0.1972 0.1772 0.2414 2.1 1nlw:D
25 7ttl:C 617 71 0.3099 0.0357 0.3099 2.2 6n2w:A, 6n2w:B
26 3v99:B 639 71 0.3099 0.0344 0.3099 2.3
27 7ttj:B 590 71 0.3099 0.0373 0.3099 2.3
28 7ttj:A 643 71 0.3099 0.0342 0.3099 2.6 7ttl:B, 3v99:A
29 1mdy:A 68 45 0.2254 0.2353 0.3556 4.3 1mdy:B, 1mdy:C, 1mdy:D
30 6qzo:A 361 24 0.0986 0.0194 0.2917 7.3 6qzo:B, 6qzo:C, 6qzo:D, 6qzo:E, 6qzo:F, 6qzo:G, 6qzo:H
31 7z5i:A 56 45 0.2113 0.2679 0.3333 7.9 7z5i:B, 7z5k:A, 7z5k:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417