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BioLiP
>protein
RPLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGFVK
GATIACPPPSDSFAGADIYSSLRMPSGISPALVLEPKNAALLAARIFSLYDKEIADSVKSYMESNAQKIIEDDSKL

The query sequence (length=156) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3rgg:A 156 156 1.0000 1.0000 1.0000 6.85e-112 3rgg:B, 3rgg:C, 3rgg:D
2 7ale:A 419 153 0.3462 0.1289 0.3529 2.48e-30 7ale:B, 6yb8:A, 6yb8:B, 6yb9:A, 6yb9:B
3 5cli:A 160 151 0.3205 0.3125 0.3311 3.10e-04 5clj:A, 2fwi:A, 2fwj:A, 2fwp:A, 4z7j:A, 4z7j:B
4 2nsh:A 163 155 0.2372 0.2270 0.2387 0.002 2ate:A, 1d7a:A, 1d7a:B, 1d7a:C, 1d7a:D, 2nsj:A, 2nsl:A
5 3tm2:A 367 95 0.1346 0.0572 0.2211 0.80 3tm2:B
6 3q2t:A 205 87 0.1667 0.1268 0.2989 6.4 3bho:A, 3mdg:A, 3mdi:A, 3p6y:A, 3p6y:B, 3p6y:E, 3p6y:I, 3p6y:M, 3p6y:N, 3p6y:F, 3q2t:B, 5r4p:A, 5r4p:B, 5r4q:A, 5r4q:B, 5r4r:A, 5r4r:B, 5r4s:A, 5r4s:B, 5r4t:A, 5r4t:B, 5r4u:A, 5r4u:B, 5r64:A, 5r64:B, 5r65:A, 5r65:B, 5r66:A, 5r66:B, 5r67:A, 5r67:B
7 3odm:C 530 40 0.0833 0.0245 0.3250 9.2 3odm:A, 3odm:D, 3odm:E, 3odm:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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