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BioLiP
>protein
RPLVFLCSGCRRPLGDSLSWVANCILLRCVSCNVSVDGCVLETLCCAGCSLNLGYVYRCTPKNLDYKRDLFCLSVEAIES
YVLG

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7sfz:H 84 84 1.0000 1.0000 1.0000 1.56e-55
2 7sfz:A 100 98 1.0000 0.8400 0.8571 6.44e-51 7sfz:B, 7sfz:C, 7sfz:D, 7sfz:E, 7sfz:F, 7sfz:G
3 5j6p:B 102 99 0.4048 0.3333 0.3434 1.03e-09 5hj0:A, 5hj0:B, 5hj0:C, 5j6p:A, 5j6p:C
4 1wyh:A 72 28 0.1786 0.2083 0.5357 0.37
5 5jio:A 467 58 0.2262 0.0407 0.3276 2.5 5k41:A, 5k42:A, 5k44:A, 5k5c:A, 5l3k:A, 5l3k:B, 5l3k:C, 5l3k:D, 5l3k:E, 5l3k:F, 5l3k:G, 5l3k:H
6 3adp:A 310 17 0.0952 0.0258 0.4706 3.7
7 7r81:L2 90 24 0.1190 0.1111 0.4167 5.8 7olc:SK, 7old:SK, 8oo0:SK, 7z3n:SK, 7z3o:SK

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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