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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVDVSR
LRRLVTQ

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2icp:A 87 87 1.0000 1.0000 1.0000 2.28e-58
2 6chv:D 91 79 0.3793 0.3626 0.4177 5.96e-21 6chv:A, 6chv:C, 6chv:B, 6chv:G, 6chv:H
3 6fix:B 99 75 0.2989 0.2626 0.3467 2.32e-12 6fix:A, 6fix:D, 6fix:E
4 7csy:B 97 73 0.2874 0.2577 0.3425 2.31e-09 7csw:B, 7csy:A, 7csy:C, 7csy:D, 6jpi:A, 6jpi:B, 6jpi:C, 6jpi:D, 6lb3:A, 6lb3:B, 6lb3:G, 6lb3:H, 6lb3:C, 6lb3:D, 6lb3:E, 6lb3:F
5 2pg3:A 221 48 0.1609 0.0633 0.2917 0.23
6 6wil:A 536 43 0.1954 0.0317 0.3953 1.8
7 4fx9:B 443 96 0.2759 0.0542 0.2500 3.0 4fx9:A, 5l1n:A, 5l1n:B
8 1hlv:A 131 37 0.1724 0.1145 0.4054 4.0
9 6lxn:A 110 79 0.2644 0.2091 0.2911 4.5 6lxn:B
10 7k4u:A 305 28 0.1379 0.0393 0.4286 6.6 2bnj:A, 4bs0:A, 4bs0:B, 8fos:A, 1goq:A, 1gor:A, 7k4q:A, 7k4q:B, 7k4w:A, 7k4x:A, 7k4x:B, 7k4z:A, 8kh3:A, 3nyd:A, 3nyd:B, 8rd5:A, 8rd5:B, 5rga:A, 5rga:B, 5rgb:A, 5rgb:B, 5rgc:A, 5rgc:B, 5rgd:A, 5rgd:B, 5rge:A, 5rgf:A, 5rgf:B, 6srw:A, 6srw:B, 6sry:A, 6sry:B, 6srz:A, 6srz:B, 6ss1:A, 6ss1:B, 6ss3:A, 6ss3:B, 6tu6:A, 6tu6:B, 6tu6:C, 6tu6:D, 6tu6:E, 6tu6:F, 6tu6:G, 6tu6:H, 6tu6:I, 6tu6:J, 6tu6:K, 6tu6:L, 6tu6:M, 6tu6:N, 6tu6:O, 6tu6:P, 8usf:A, 8usf:B, 8ush:A, 8ush:B, 8usj:A, 8usj:B, 8usj:C, 8usl:A, 8usl:B
11 3bl5:E 199 40 0.1494 0.0653 0.3250 6.7 3bl5:A, 3bl5:B, 3bl5:C, 3bl5:D, 3bl5:F
12 1c7n:A 394 19 0.1034 0.0228 0.4737 6.8 1c7n:B, 1c7n:C, 1c7n:D, 1c7n:E, 1c7n:F, 1c7n:G, 1c7n:H, 1c7o:A, 1c7o:B, 1c7o:C, 1c7o:D, 1c7o:E, 1c7o:F, 1c7o:G, 1c7o:H
13 1d8u:A 165 26 0.1264 0.0667 0.4231 7.0 1d8u:B, 2gnv:A, 2gnv:B, 2gnw:A, 2gnw:B
14 7rkh:D 559 56 0.1724 0.0268 0.2679 8.5 7rkh:C, 7rkh:A, 7rkh:B, 7rl0:A, 7rl0:D, 7rl0:B, 7rl0:C, 7rl0:E, 7rl0:H, 7rl0:F, 7rl0:G, 7rl0:W, 7rl0:Z, 7rl0:X, 7rl0:Y, 7rl5:A, 7rl5:B, 7rl5:D, 7rl5:C, 7rl5:E, 7rl5:M, 7rl5:R, 7rl5:P, 7rl5:L, 7rl5:O, 7rl5:S, 7rl5:Q, 7rnl:B, 7rnl:C, 7rnl:D, 7rnl:A, 7rnl:H, 7rnl:K, 7rnl:N, 7rnl:E, 7rnl:I, 7rnl:L, 7rnl:O, 7rnl:F, 7rnl:J, 7rnl:M, 7rnl:P, 7rnl:G, 7rnr:A, 7rnr:B, 7rnr:F, 7rnr:E, 7rnr:Q, 7rnr:S, 7rnr:a, 7rnr:Y, 7rnr:I, 7rnr:J, 7rnr:N, 7rnr:M, 7rnr:R, 7rnr:T, 7rnr:b, 7rnr:Z, 7rnr:g, 7rnr:h, 7rnr:l, 7rnr:k
15 7auk:A 168 36 0.1149 0.0595 0.2778 9.4 7aui:A, 7auj:A, 7aul:A, 7aum:A, 7aun:A, 7aup:A, 7aus:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218