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BioLiP
>protein
RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGA

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4bnr:J 58 58 1.0000 1.0000 1.0000 1.18e-38 1bhc:J, 4bnr:I, 1bpi:A, 1bz5:A, 2fi3:I, 2fi4:I, 2fi5:I, 3fp7:J, 2ftl:I, 2ftm:B, 3ldj:B, 3ldj:C, 6pti:A, 1qlq:A
2 4bqd:A 78 52 0.3793 0.2821 0.4231 8.44e-11 4bqd:B
3 5nx1:D 42 41 0.3276 0.4524 0.4634 3.50e-08 5nx3:D
4 2knt:A 58 53 0.3103 0.3103 0.3396 1.46e-07 1knt:A
5 5jbt:Y 38 36 0.2759 0.4211 0.4444 7.72e-07
6 8zsz:A 315 14 0.1379 0.0254 0.5714 1.5 8zsb:A, 8zsb:B, 8zsz:B
7 7mbp:A 996 21 0.2069 0.0120 0.5714 1.5 7mbp:B, 7mbp:C, 7mbp:D, 7mbq:A, 7mbq:B, 7mbq:C, 7mbq:D, 7mbr:A, 7mbr:B, 7mbr:C, 7mbr:D, 7mbs:A, 7mbs:B, 7mbs:C, 7mbs:D, 7mbt:A, 7mbt:D, 7mbt:B, 7mbt:C, 7mbu:A, 7mbu:D, 7mbu:B, 7mbu:C, 7mbv:A, 7mbv:B, 7mbv:C, 7mbv:D
8 2pfy:A 301 22 0.1552 0.0299 0.4091 3.5 2pfy:B, 2pfy:C, 2pfy:D
9 3akm:A 131 14 0.1552 0.0687 0.6429 4.7 3akm:B, 3akm:C, 3akm:D, 2mji:A
10 5v8k:A 600 21 0.1552 0.0150 0.4286 5.4
11 2wr8:A 258 24 0.1897 0.0426 0.4583 5.9 1wu8:A, 1wu8:B, 1wu8:C
12 8btd:SC 210 42 0.2931 0.0810 0.4048 6.1 8br8:SC, 8brm:SC, 8bsi:SC, 8bsj:SC, 8btr:SC, 8fvy:D, 8g4s:D, 7pwf:D, 7pwo:D1
13 6ffn:A 182 25 0.1552 0.0495 0.3600 8.2 1cqq:A, 6ffs:A, 5fx5:A, 5fx6:A, 2xya:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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