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BioLiP
>protein
RPATILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ik5:C 67 60 0.9833 0.8806 0.9833 4.60e-37 8ike:C, 8ilw:C
2 5hod:A 61 57 0.5333 0.5246 0.5614 1.26e-17 5hod:D
3 6es3:K 72 56 0.3500 0.2917 0.3750 9.41e-07 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
4 8osb:E 62 59 0.4000 0.3871 0.4068 1.31e-06
5 2lkx:A 68 56 0.3667 0.3235 0.3929 1.47e-06
6 1fjl:A 65 56 0.3500 0.3231 0.3750 2.31e-06 1fjl:B, 1fjl:C
7 6e8c:A 135 56 0.3500 0.1556 0.3750 3.65e-06 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
8 6e8c:A 135 50 0.3500 0.1556 0.4200 3.11e-05 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
9 3a01:F 61 56 0.3667 0.3607 0.3929 3.91e-06 3a01:B, 3lnq:A
10 4rdu:D 62 59 0.3500 0.3387 0.3559 5.03e-06 4rdu:A, 4xrs:I, 4xrs:G
11 3cmy:A 60 56 0.3500 0.3500 0.3750 4.37e-05
12 4qtr:C 57 53 0.2833 0.2982 0.3208 5.34e-05 4qtr:A, 4qtr:B, 4qtr:D
13 6m3d:C 108 56 0.3000 0.1667 0.3214 7.31e-05 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
14 6m3d:C 108 50 0.2167 0.1204 0.2600 0.24 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
15 8ejo:A 56 37 0.2667 0.2857 0.4324 0.002 8ejo:B, 8ejp:A, 8ejp:B
16 4uus:A 67 43 0.2333 0.2090 0.3256 0.002 4uus:E
17 2ld5:A 67 29 0.2500 0.2239 0.5172 0.002
18 2d5v:A 135 50 0.2500 0.1111 0.3000 0.003 2d5v:B, 8t0f:A, 8t11:A
19 1lfu:P 82 33 0.2167 0.1585 0.3939 0.003 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
20 5eea:G 63 29 0.2333 0.2222 0.4828 0.003 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
21 1puf:A 77 53 0.3000 0.2338 0.3396 0.004 2lp0:A
22 1b72:A 68 56 0.3333 0.2941 0.3571 0.005
23 4cyc:A 66 40 0.2333 0.2121 0.3500 0.006 1b8i:A
24 1ig7:A 58 57 0.3167 0.3276 0.3333 0.012
25 8eml:A 58 56 0.3167 0.3276 0.3393 0.012 8eml:B
26 2r5z:A 75 56 0.3000 0.2400 0.3214 0.013 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
27 2h1k:B 60 56 0.3167 0.3167 0.3393 0.015 2h1k:A
28 1gt0:C 137 53 0.2833 0.1241 0.3208 0.018 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
29 3d1n:I 150 53 0.3000 0.1200 0.3396 0.021 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
30 1ahd:P 68 40 0.2333 0.2059 0.3500 0.025
31 1jgg:A 57 56 0.3167 0.3333 0.3393 0.038 1jgg:B
32 3l1p:A 147 56 0.3167 0.1293 0.3393 0.039 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
33 8bx1:A 127 45 0.2833 0.1339 0.3778 0.040
34 5zjr:A 64 32 0.2500 0.2344 0.4688 0.043 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
35 2me6:A 71 54 0.2833 0.2394 0.3148 0.063
36 8pna:A 67 53 0.2833 0.2537 0.3208 0.090 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
37 1nk2:P 77 28 0.2167 0.1688 0.4643 0.090 1nk3:P
38 9b8u:B 66 49 0.2833 0.2576 0.3469 0.17 9b8u:A, 9b8u:C, 9b8u:D
39 5wc9:A 136 54 0.2667 0.1176 0.2963 0.20 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
40 4rbo:A 55 27 0.2000 0.2182 0.4444 0.31 4rbo:D
41 4xrm:B 64 46 0.2333 0.2188 0.3043 0.35 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
42 7xrc:C 134 55 0.2833 0.1269 0.3091 0.37 2xsd:C
43 3rkq:A 58 27 0.2000 0.2069 0.4444 0.48 3rkq:B
44 8g8e:X 140 56 0.3000 0.1286 0.3214 0.72 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
45 4egc:A 539 52 0.2500 0.0278 0.2885 0.74
46 5flv:M 229 28 0.2000 0.0524 0.4286 0.91 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
47 5e37:A 313 17 0.1333 0.0256 0.4706 3.5 5e37:C
48 1le8:A 53 29 0.1833 0.2075 0.3793 3.5 1akh:A, 1yrn:A
49 8ddx:D 992 22 0.1667 0.0101 0.4545 4.1
50 8ddr:A 968 22 0.1667 0.0103 0.4545 4.3 8ddq:A, 8ddq:B, 8ddq:C, 8ddq:D, 8ddr:B, 8ddr:C, 8ddr:D, 8dds:A, 8dds:B, 8dds:C, 8dds:D, 8ddt:A, 8ddt:B, 8ddt:C, 8ddt:D, 8ddu:A, 8ddu:B, 8ddu:C, 8ddu:D, 8ddv:A, 8ddv:B, 8ddv:C, 8ddv:D, 8ddx:A, 8ddx:B, 8ddx:C, 8ed7:A, 8ed7:B, 8ed7:C, 8ed7:D, 8ed8:A, 8ed8:B, 8ed8:C, 8ed8:D, 8ed9:A, 8ed9:B, 8ed9:C, 8ed9:D
51 8si6:A 1107 23 0.1500 0.0081 0.3913 6.4 8si2:A, 8si2:B, 8si2:D, 8si2:C, 8si3:A, 8si3:B, 8si3:C, 8si3:D, 8si4:A, 8si4:B, 8si4:C, 8si4:D, 8si5:A, 8si5:B, 8si5:D, 8si5:C, 8si6:B, 8si6:C, 8si6:D, 8si7:A, 8si7:B, 8si7:D, 8si7:C, 8si8:A, 8si8:B, 8si8:D, 8si8:C, 8sia:A, 8sia:D, 8sia:B, 8sia:C, 8w2l:A, 8w2l:B, 8w2l:C, 8w2l:D
52 1zq3:P 68 24 0.1500 0.1324 0.3750 6.8
53 5npu:A 547 35 0.1833 0.0201 0.3143 9.5 5npu:B, 5npu:C, 5npu:D
54 3csl:A 753 51 0.2167 0.0173 0.2549 9.8 3csl:B, 3ddr:A, 3ddr:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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