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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RNRPGTKAQDFYNWTLAVQQYIQQNIRADCSNIDKILEPPDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCIFLCAAH
KTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDEYENETFLCHRFTK
FVMKYNLMSKDNLIVPI

The query sequence (length=177) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7k36:H 177 177 1.0000 1.0000 1.0000 2.67e-135
2 5yf4:A 129 144 0.6780 0.9302 0.8333 2.10e-82
3 5brk:A 194 151 0.2034 0.1856 0.2384 3.47e-05 5b5v:A, 5b5v:C, 5b5v:B, 5b5v:D, 5b5w:A, 5b6b:A, 5b6b:B, 5b6b:D, 5b6b:F, 5b6b:H, 5b6b:K, 5b6b:M, 5b6b:O, 5brm:A, 5brm:B, 5brm:C, 5brm:D, 5brm:E, 5brm:F, 4j1v:A, 4j1v:C, 4jiz:A, 6mcp:B, 6mcp:D, 6mcq:B, 6mcq:D, 1pi1:A, 5twf:A, 5twf:B, 5twg:A, 5twh:A, 5xqz:A, 5xqz:B
4 2hjn:A 206 162 0.1977 0.1699 0.2160 1.64e-04 5ncn:A
5 5ncm:A 183 118 0.1356 0.1311 0.2034 0.18
6 8q6o:E 249 47 0.0904 0.0643 0.3404 6.8 8q6o:6
7 3re3:B 144 104 0.1582 0.1944 0.2692 6.9
8 6lpf:B 1006 108 0.1412 0.0249 0.2315 8.0 6kid:A, 6kie:A, 6kqy:A, 6kr7:A, 6lpf:A, 6lr6:A, 6lr6:B
9 7aor:aa 1558 33 0.0621 0.0071 0.3333 8.1
10 6o3p:B 320 45 0.0904 0.0500 0.3556 8.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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