Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RMKQLEDKVEETLSKVYHLENEVARLKKLVG

The query sequence (length=31) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ysa:C 57 31 0.9355 0.5088 0.9355 6.05e-14 1dgc:A, 2dgc:A, 1ysa:D
2 5apw:B 64 29 0.9032 0.4375 0.9655 1.38e-12
3 5apw:B 64 30 0.8710 0.4219 0.9000 2.28e-12
4 3i5c:B 198 30 0.9032 0.1414 0.9333 7.88e-12 3i5c:A, 1ij0:A, 1ij0:B, 1ij0:C, 1ij1:A, 1ij1:B, 1ij1:C, 3k7z:A, 3k7z:B, 1rb4:A, 1rb4:B, 1swi:C, 6xne:C
5 1uo4:B 31 30 0.7097 0.7097 0.7333 1.52e-10 1uo5:A
6 1llm:C 87 27 0.8065 0.2874 0.9259 2.08e-10 1llm:D
7 1fav:A 78 27 0.6129 0.2436 0.7037 2.97e-10 6j5e:G, 6tvq:AaA, 6tvu:AaA, 6tvw:CCC, 3vgx:C, 3vu5:A, 3vu6:A, 3w19:C, 5yb4:E, 5yb4:F, 5yb4:D
8 3crp:B 34 31 0.7742 0.7059 0.7742 3.35e-10 2b1f:A, 2b1f:C, 3crp:C
9 1uny:B 30 30 0.7097 0.7333 0.7333 4.60e-10
10 2bni:C 34 31 0.6774 0.6176 0.6774 1.58e-09 2bni:D, 1u9h:A
11 1czq:A 45 30 0.6129 0.4222 0.6333 3.47e-07 1gzl:A, 1gzl:B, 3l35:A, 3l35:C, 3l35:B, 3l36:A, 3l37:A, 3mgn:D, 3mgn:F, 3mgn:A, 3mgn:C, 3mgn:E, 3mgn:B, 6psa:A, 2q3i:A, 2r3c:A, 2r3c:B, 2r5b:A, 2r5b:C, 2r5b:B, 2r5d:A, 2r5d:C, 2r5d:B
12 2r2v:C 33 31 0.5484 0.5152 0.5484 1.14e-06 2r2v:D
13 4hjb:C 30 31 0.6129 0.6333 0.6129 1.98e-06 4hjb:D
14 3w8v:A 32 31 0.6129 0.5938 0.6129 3.02e-04 3w8v:B, 3w92:A, 3w92:B, 3w92:C, 3w93:A, 3w93:B, 3w93:C
15 8epv:A 136 16 0.2581 0.0588 0.5000 5.3
16 6iry:A 468 20 0.2903 0.0192 0.4500 5.6 6irz:A, 6is0:A
17 7zw0:sh 776 20 0.3226 0.0129 0.5000 6.5
18 7fqi:A 265 15 0.2903 0.0340 0.6000 8.5 4aw9:A, 4awa:A, 4awb:A, 4awb:B, 7fqh:A, 7fqh:B, 7fqh:D, 7fqi:C, 7fqi:B, 7fqj:A, 7fqj:C, 7fqj:B, 7fqk:A, 7fqk:B, 7fqk:C, 7fqk:D, 7fql:A, 7fql:F, 7fql:B, 7fql:H, 7fql:C, 7fql:G, 7fql:D, 7fql:E, 5lu8:A, 5lu9:A, 5lua:B, 5lub:B, 7o50:A, 7o50:B
19 3hf0:A 30 14 0.2903 0.3000 0.6429 9.5

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417