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BioLiP
>protein
RMKQLEDKVEELLSKAYHLENEVARLKKLVG

The query sequence (length=31) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ysa:C 57 31 0.9677 0.5263 0.9677 8.20e-15 1dgc:A, 2dgc:A, 1ysa:D
2 3i5c:B 198 30 0.9355 0.1465 0.9667 9.51e-13 3i5c:A, 1ij0:A, 1ij0:B, 1ij0:C, 1ij1:A, 1ij1:B, 1ij1:C, 3k7z:A, 3k7z:B, 1rb4:A, 1rb4:B, 1swi:C, 6xne:C
3 5apw:B 64 29 0.9032 0.4375 0.9655 1.16e-12
4 5apw:B 64 30 0.8710 0.4219 0.9000 2.19e-12
5 1llm:C 87 27 0.8387 0.2989 0.9630 1.97e-11 1llm:D
6 3crp:B 34 31 0.8065 0.7353 0.8065 5.06e-11 2b1f:A, 2b1f:C, 3crp:C
7 1uo4:B 31 30 0.7097 0.7097 0.7333 2.16e-10 1uo5:A
8 2bni:C 34 31 0.6774 0.6176 0.6774 2.46e-10 2bni:D, 1u9h:A
9 1fav:A 78 27 0.6129 0.2436 0.7037 6.82e-10 6j5e:G, 6tvq:AaA, 6tvu:AaA, 6tvw:CCC, 3vgx:C, 3vu5:A, 3vu6:A, 3w19:C, 5yb4:E, 5yb4:F, 5yb4:D
10 1uny:B 30 30 0.7097 0.7333 0.7333 7.96e-10
11 1czq:A 45 30 0.6129 0.4222 0.6333 7.89e-08 1gzl:A, 1gzl:B, 3l35:A, 3l35:C, 3l35:B, 3l36:A, 3l37:A, 3mgn:D, 3mgn:F, 3mgn:A, 3mgn:C, 3mgn:E, 3mgn:B, 6psa:A, 2q3i:A, 2r3c:A, 2r3c:B, 2r5b:A, 2r5b:C, 2r5b:B, 2r5d:A, 2r5d:C, 2r5d:B
12 4hjb:C 30 31 0.6129 0.6333 0.6129 2.98e-06 4hjb:D
13 2r2v:C 33 31 0.5484 0.5152 0.5484 4.32e-06 2r2v:D
14 3w8v:A 32 31 0.6129 0.5938 0.6129 3.05e-04 3w8v:B, 3w92:A, 3w92:B, 3w92:C, 3w93:A, 3w93:B, 3w93:C
15 4oo8:A 1301 22 0.3226 0.0077 0.4545 6.9 4zt0:C
16 3zjh:B 193 13 0.2903 0.0466 0.6923 9.8 3qzx:A, 3qzz:A, 3r0g:A, 3r0g:B, 2veb:A, 2vee:A, 2vee:B, 2vee:C, 2vee:D, 2vee:E, 2vee:F, 2vee:G, 2vee:H, 3zh0:A, 3zh0:B, 3zh0:C, 3zh0:D, 3zjh:A, 3zji:A, 3zji:B, 3zjj:A, 3zjj:B, 3zjj:C, 3zjl:A, 3zjl:B, 3zjm:A, 3zjm:B, 3zjm:C, 3zjn:A, 3zjn:B, 3zjo:A, 3zjo:B, 3zjp:A, 3zjq:A, 3zjq:B, 3zjr:A, 3zjs:A, 3zjs:B, 3zol:A, 3zol:B, 3zom:A, 3zom:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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