Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RLIHVSRCEMGTSTHRCWPRPCDTSSDEPISFWPPFENTPNVIVSFGMLDVDNSNNLRVNSSADDVTVGGFTLHYNSWYT
TTVWNYKLIWIACD

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3wmp:D 94 94 1.0000 1.0000 1.0000 3.36e-67 3wmp:F, 5x4a:H, 5x4a:I, 5x4a:A, 5x4a:C
2 4q56:A 101 65 0.2340 0.2178 0.3385 6.02e-07
3 8j4u:O 585 23 0.0957 0.0154 0.3913 0.46 8j4u:M, 8j4u:N, 8su9:M, 8su9:N, 8su9:O, 8sub:M, 8sub:N, 8sub:O, 8suw:M, 8suw:N, 8suw:O, 8uae:M, 8uae:N, 8uae:O, 8uaf:M, 8uaf:N, 8uaf:O
4 7ooc:G 141 50 0.1383 0.0922 0.2600 0.94 7p6z:G, 7pah:G, 7pai:G, 7paj:G, 7pak:G, 7pal:G, 7pam:G, 7pan:G, 7pao:G, 7paq:G, 7par:G, 7pas:G, 7ph9:G, 7pha:G, 7phb:G, 7phc:G, 7pi8:G, 7pi9:G, 7pia:G, 7pib:G, 7pic:G, 7pio:G, 7pip:G, 7piq:G, 7pir:G, 7pis:G, 7pit:G
5 6ri5:w 367 54 0.1915 0.0490 0.3333 1.3
6 6n8m:V 393 54 0.1915 0.0458 0.3333 1.8 5h4p:w, 8hfr:vV, 6n8k:v, 6n8l:v, 6n8n:V, 6n8o:V, 6qik:w, 6qtz:w, 6rzz:w, 6s05:w, 5t62:V, 5t6r:V, 7z34:v
7 8crx:H 134 36 0.1170 0.0821 0.3056 3.3 8cwo:H
8 7u4h:A 576 45 0.1596 0.0260 0.3333 3.8 7u4h:B
9 8fmw:H 132 40 0.0957 0.0682 0.2250 4.5
10 8fkb:A 424 11 0.0851 0.0189 0.7273 5.5 6cvc:A, 8fjo:A, 8flo:A, 8gdi:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417