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BioLiP
>protein
RLEECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKET
VFPLDIGIAGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEEVFK
KYLNFISLVLR

The query sequence (length=171) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3dba:A 171 171 1.0000 1.0000 1.0000 2.55e-127 3dba:B
2 8ulg:B 824 171 0.5263 0.1092 0.5263 3.28e-53 7jsn:B, 6mzb:B, 8ufi:B, 8ugb:B, 8ugs:B
3 8ulg:B 824 90 0.1228 0.0255 0.2333 1.7 7jsn:B, 6mzb:B, 8ufi:B, 8ugb:B, 8ugs:B
4 8ulg:A 827 170 0.4561 0.0943 0.4588 8.73e-47 7jsn:A, 6mzb:A, 8ufi:A, 8ugb:A, 8ugs:A
5 2zmf:A 177 155 0.2982 0.2881 0.3290 1.08e-20 2zmf:B
6 2k31:A 149 147 0.2632 0.3020 0.3061 4.72e-14
7 4mcw:B 363 77 0.1813 0.0854 0.4026 6.49e-12 4mcw:A, 4mdz:A, 4mdz:B, 4me4:A, 4me4:B
8 3ibj:A 661 157 0.2573 0.0666 0.2803 1.24e-10 4c1i:A, 4c1i:B, 4c1i:C, 4c1i:D, 6c7d:A, 6c7d:B, 6c7d:C, 6c7d:D, 6c7e:A, 6c7e:B, 6c7e:C, 6c7e:D, 6c7f:A, 6c7f:B, 6c7f:C, 6c7g:A, 6c7g:B, 6c7g:C, 6c7g:D, 6c7i:A, 6c7i:B, 6c7i:C, 6c7i:D, 6c7j:A, 6c7j:B, 6c7j:C, 6c7j:D, 4d08:A, 4d08:B, 4d08:C, 4d08:D, 4d09:A, 4d09:B, 4d09:C, 4d09:D, 6ezf:A, 4htx:A, 4htx:B, 4htx:C, 4htx:D, 4htz:A, 4htz:B, 4htz:C, 4htz:D, 3itm:A, 3itm:B, 3itm:C, 3itm:D, 3itu:A, 3itu:B, 3itu:C, 3itu:D, 4jib:A, 4jib:B, 4jib:C, 4jib:D, 1mc0:A, 5tz3:A, 5tz3:B, 5tz3:C, 5tz3:D, 5tza:A, 5tza:B, 5tza:C, 5tza:D, 5tzc:A, 5tzc:B, 5tzc:C, 5tzc:D, 5tzh:A, 5tzh:B, 5tzh:C, 5tzh:D, 5tzw:A, 5tzw:B, 5tzw:C, 5tzw:D, 5tzx:A, 5tzx:B, 5tzx:C, 5tzx:D, 5tzz:A, 5tzz:B, 5tzz:C, 5tzz:D, 5u00:A, 5u00:B, 5u00:C, 5u00:D, 5u7d:A, 5u7d:B, 5u7d:C, 5u7i:A, 5u7i:B, 5u7i:C, 5u7i:D, 5u7j:A, 5u7j:B, 5u7j:C, 5u7j:D, 5u7k:A, 5u7k:B, 5u7k:C, 5u7k:D, 5u7l:A, 5u7l:B, 5u7l:C, 5vp0:A, 5vp0:B, 5vp0:C, 5vp1:A, 5vp1:B, 5vp1:C, 5xkm:A, 5xkm:B, 5xkm:C, 5xkm:D, 5xkm:E, 5xkm:F, 1z1l:A, 6znd:A, 6znd:B, 6zqz:A, 6zqz:B, 6zqz:C, 6zqz:D
9 3ibj:A 661 166 0.2515 0.0651 0.2590 2.21e-05 4c1i:A, 4c1i:B, 4c1i:C, 4c1i:D, 6c7d:A, 6c7d:B, 6c7d:C, 6c7d:D, 6c7e:A, 6c7e:B, 6c7e:C, 6c7e:D, 6c7f:A, 6c7f:B, 6c7f:C, 6c7g:A, 6c7g:B, 6c7g:C, 6c7g:D, 6c7i:A, 6c7i:B, 6c7i:C, 6c7i:D, 6c7j:A, 6c7j:B, 6c7j:C, 6c7j:D, 4d08:A, 4d08:B, 4d08:C, 4d08:D, 4d09:A, 4d09:B, 4d09:C, 4d09:D, 6ezf:A, 4htx:A, 4htx:B, 4htx:C, 4htx:D, 4htz:A, 4htz:B, 4htz:C, 4htz:D, 3itm:A, 3itm:B, 3itm:C, 3itm:D, 3itu:A, 3itu:B, 3itu:C, 3itu:D, 4jib:A, 4jib:B, 4jib:C, 4jib:D, 1mc0:A, 5tz3:A, 5tz3:B, 5tz3:C, 5tz3:D, 5tza:A, 5tza:B, 5tza:C, 5tza:D, 5tzc:A, 5tzc:B, 5tzc:C, 5tzc:D, 5tzh:A, 5tzh:B, 5tzh:C, 5tzh:D, 5tzw:A, 5tzw:B, 5tzw:C, 5tzw:D, 5tzx:A, 5tzx:B, 5tzx:C, 5tzx:D, 5tzz:A, 5tzz:B, 5tzz:C, 5tzz:D, 5u00:A, 5u00:B, 5u00:C, 5u00:D, 5u7d:A, 5u7d:B, 5u7d:C, 5u7i:A, 5u7i:B, 5u7i:C, 5u7i:D, 5u7j:A, 5u7j:B, 5u7j:C, 5u7j:D, 5u7k:A, 5u7k:B, 5u7k:C, 5u7k:D, 5u7l:A, 5u7l:B, 5u7l:C, 5vp0:A, 5vp0:B, 5vp0:C, 5vp1:A, 5vp1:B, 5vp1:C, 5xkm:A, 5xkm:B, 5xkm:C, 5xkm:D, 5xkm:E, 5xkm:F, 1z1l:A, 6znd:A, 6znd:B, 6zqz:A, 6zqz:B, 6zqz:C, 6zqz:D
10 1ykd:A 383 176 0.3041 0.1358 0.2955 3.32e-10 1ykd:B
11 1ykd:A 383 143 0.2164 0.0966 0.2587 2.50e-06 1ykd:B
12 5w10:A 173 84 0.1696 0.1676 0.3452 4.41e-10 5w10:B, 5w10:C, 5w10:D
13 3ibj:B 643 81 0.1754 0.0467 0.3704 2.64e-07
14 3ibj:B 643 166 0.2515 0.0669 0.2590 1.95e-05
15 3w2z:A 178 133 0.1696 0.1629 0.2180 0.040 5zoh:A
16 1guz:A 305 76 0.1170 0.0656 0.2632 0.56 1guz:B, 1guz:C, 1guz:D
17 1on3:E 520 102 0.1520 0.0500 0.2549 0.75 1on3:A, 1on3:D, 1on3:B, 1on3:C, 1on3:F, 1on9:A, 1on9:B, 1on9:C, 1on9:D, 1on9:E, 1on9:F
18 3mk4:A 285 68 0.1170 0.0702 0.2941 1.5
19 7lsd:B 152 46 0.0760 0.0855 0.2826 1.7 7lsd:A, 7lsd:C, 7lsd:D
20 9bh5:CV 128 36 0.0702 0.0938 0.3333 2.9 9cai:CV
21 6bhn:A 156 153 0.1754 0.1923 0.1961 4.3 6bho:A
22 5nws:A 395 63 0.1287 0.0557 0.3492 4.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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