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BioLiP
>protein
RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ox1:M 65 57 1.0000 0.8769 1.0000 2.20e-36 1iv6:A, 8ox1:L, 1w0t:A, 1w0t:B
2 1vfc:A 63 54 0.5439 0.4921 0.5741 6.89e-18 3sjm:A, 3sjm:B, 1w0u:A, 1w0u:B
3 7c4p:A 55 53 0.4561 0.4727 0.4906 8.62e-12 7c4p:B, 7c4q:A, 7c4q:B, 7c4r:A, 7c4r:B
4 8ity:4 365 46 0.2982 0.0466 0.3696 0.023 8iue:4, 8iuh:4
5 1h88:C 152 51 0.3158 0.1184 0.3529 0.023 1h89:C, 1h8a:C, 1mse:C, 1msf:C
6 1h88:C 152 43 0.2807 0.1053 0.3721 0.56 1h89:C, 1h8a:C, 1mse:C, 1msf:C
7 7xur:A 307 46 0.2982 0.0554 0.3696 0.027
8 7n7b:B 271 37 0.2281 0.0480 0.3514 0.028 7n7b:A, 7n7c:A, 7n7c:B
9 6g0l:M 855 24 0.2281 0.0152 0.5417 0.039 7nkx:W, 5o9g:W
10 9gd1:W 849 24 0.2281 0.0153 0.5417 0.039
11 6ftx:W 878 24 0.2281 0.0148 0.5417 0.039 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
12 7tn2:W 895 24 0.2281 0.0145 0.5417 0.043 9gd2:W, 9gd3:W
13 8i0s:L 169 40 0.2982 0.1006 0.4250 0.13
14 8i0u:L 387 40 0.2982 0.0439 0.4250 0.14 8i0v:L
15 8ch6:P 330 40 0.2982 0.0515 0.4250 0.14 8i0t:L, 7qtt:P
16 5mqf:L 336 44 0.3158 0.0536 0.4091 0.15
17 9fmd:L 555 44 0.3158 0.0324 0.4091 0.15 8c6j:O, 7dvq:L, 6ff4:L, 8i0p:L, 8i0r:L, 6zym:L
18 6qdv:O 441 44 0.3158 0.0408 0.4091 0.15 7w59:L, 7w5a:L, 7w5b:L
19 8i0w:L 419 44 0.3158 0.0430 0.4091 0.16 5yzg:L
20 8ro2:L 555 44 0.3158 0.0324 0.4091 0.17 7abi:L
21 6icz:L 454 44 0.3158 0.0396 0.4091 0.17 5xjc:L
22 6id0:L 475 44 0.3158 0.0379 0.4091 0.18 6id1:L
23 3osg:A 110 46 0.2632 0.1364 0.3261 0.19 3osf:A, 3osf:D, 3osg:D
24 8ro1:L 623 44 0.2982 0.0273 0.3864 0.19 8ro0:L
25 5z56:L 342 44 0.3158 0.0526 0.4091 0.23 5z57:L, 5z58:L
26 2qhb:A 86 60 0.3333 0.2209 0.3167 0.25 2qhb:B
27 7b9v:O 280 25 0.1930 0.0393 0.4400 0.27
28 5gmk:c 436 25 0.1930 0.0252 0.4400 0.27 5lj3:O, 5mps:O, 5mq0:O, 5wsg:c
29 5gm6:c 415 25 0.1930 0.0265 0.4400 0.28
30 5lj5:O 283 24 0.1930 0.0389 0.4583 0.28
31 6j6g:c 436 24 0.1930 0.0252 0.4583 0.30 6j6h:c, 6j6n:c, 6j6q:c, 5y88:J, 5ylz:J
32 7dco:L 435 24 0.1930 0.0253 0.4583 0.31
33 6exn:O 320 24 0.1930 0.0344 0.4583 0.36 6bk8:S
34 3jb9:W 426 25 0.1930 0.0258 0.4400 0.38
35 6kks:A 106 28 0.2105 0.1132 0.4286 0.57
36 3keo:B 207 22 0.1579 0.0435 0.4091 1.7 3keo:A, 3keq:A, 3keq:B, 3ket:A
37 7f4l:B 130 29 0.1930 0.0846 0.3793 5.0 7f4m:B, 7f4n:B
38 4k6m:A 888 18 0.1754 0.0113 0.5556 5.2 4hdg:A, 4hdg:B, 4hdh:A, 4hdh:B, 4k6m:B, 4mtp:A, 4mtp:B
39 5it7:ee 122 38 0.2281 0.1066 0.3421 6.5 6uz7:Be
40 7mbp:A 996 26 0.1579 0.0090 0.3462 7.5 7mbp:B, 7mbp:C, 7mbp:D, 7mbq:A, 7mbq:B, 7mbq:C, 7mbq:D, 7mbr:A, 7mbr:B, 7mbr:C, 7mbr:D, 7mbs:A, 7mbs:B, 7mbs:C, 7mbs:D, 7mbt:A, 7mbt:D, 7mbt:B, 7mbt:C, 7mbu:A, 7mbu:D, 7mbu:B, 7mbu:C, 7mbv:A, 7mbv:B, 7mbv:C, 7mbv:D
41 7vx0:B 680 27 0.1579 0.0132 0.3333 8.4 7vx0:A, 7vyj:A, 7vyj:B, 7vyo:A, 7vyo:B, 7vyp:A, 7vyp:B, 7vzn:A, 7vzn:B, 7vzq:A, 7vzq:B, 7vzu:A, 7vzu:B, 7vzy:A, 7vzy:B, 7vzz:A, 7vzz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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