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BioLiP
>protein
RKRNRIPLGCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLSK

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2hap:C 76 76 0.9868 0.9868 0.9868 3.71e-49 2hap:D, 1hwt:C, 1hwt:D, 1hwt:G, 1hwt:H, 1pyc:A, 1qp9:A, 1qp9:B, 1qp9:C, 1qp9:D
2 6gys:B 579 48 0.2368 0.0311 0.3750 5.11e-05 6f07:B, 6gyp:B, 6gys:C, 6gys:J, 6gys:I, 6gyu:B, 7k7g:M, 8ow1:CE
3 3coq:A 89 37 0.1974 0.1685 0.4054 0.045 3coq:B, 1d66:A, 1d66:B, 7uik:T, 7uik:U, 7uio:GA, 7uio:GB
4 1aw6:A 43 31 0.1711 0.3023 0.4194 0.068
5 1ajy:A 71 40 0.1842 0.1972 0.3500 0.096 1ajy:B, 1zme:C, 1zme:D
6 1pyi:A 88 28 0.1579 0.1364 0.4286 0.43 1pyi:B
7 1cld:A 33 27 0.1579 0.3636 0.4444 0.91
8 2yfn:A 719 31 0.1447 0.0153 0.3548 2.4 2yfo:A
9 7qbu:A 418 60 0.2500 0.0455 0.3167 4.4 7qbs:A, 7qbt:A, 7qbt:B, 7qbt:C, 7qbt:D, 7qbu:B, 7qbv:A, 7qbv:B, 7qbv:C, 7qbv:D
10 2iu8:A 346 29 0.1316 0.0289 0.3448 5.7 2iu8:B, 2iu8:C, 2iu9:A, 2iu9:B, 2iu9:C, 2iua:A, 2iua:C
11 8i9r:Cg 233 35 0.1447 0.0472 0.3143 6.0 8i9t:Cg
12 4ail:C 750 31 0.1447 0.0147 0.3548 7.8 2jgu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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