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BioLiP
>protein
RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ig7:A 58 58 1.0000 1.0000 1.0000 8.71e-36
2 4rdu:D 62 58 0.5862 0.5484 0.5862 1.40e-20 4rdu:A, 4xrs:I, 4xrs:G
3 2me6:A 71 58 0.5862 0.4789 0.5862 5.24e-19
4 3rkq:A 58 56 0.5862 0.5862 0.6071 2.64e-18 3rkq:B
5 8pna:A 67 57 0.5172 0.4478 0.5263 1.71e-16 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
6 1nk2:P 77 57 0.5862 0.4416 0.5965 7.02e-16 1nk3:P
7 1b72:A 68 54 0.5517 0.4706 0.5926 1.36e-15
8 8eml:A 58 56 0.5345 0.5345 0.5536 1.55e-15 8eml:B
9 3a01:A 78 57 0.5000 0.3718 0.5088 5.17e-15 3a01:E
10 5flv:M 229 51 0.5345 0.1354 0.6078 5.36e-15 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
11 6es3:K 72 57 0.4655 0.3750 0.4737 3.45e-14 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
12 1puf:A 77 58 0.5172 0.3896 0.5172 1.66e-13 2lp0:A
13 2h1k:B 60 57 0.4828 0.4667 0.4912 4.94e-13 2h1k:A
14 5zjr:A 64 57 0.5000 0.4531 0.5088 1.89e-12 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
15 4uus:A 67 55 0.4655 0.4030 0.4909 2.01e-12 4uus:E
16 2r5z:A 75 54 0.4828 0.3733 0.5185 2.23e-12 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
17 6m3d:C 108 56 0.4483 0.2407 0.4643 2.66e-12 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
18 6m3d:C 108 51 0.3966 0.2130 0.4510 7.71e-10 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
19 1jgg:A 57 54 0.4483 0.4561 0.4815 3.14e-12 1jgg:B
20 2ld5:A 67 58 0.4310 0.3731 0.4310 5.27e-12
21 5eea:G 63 58 0.4138 0.3810 0.4138 8.29e-12 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
22 1ahd:P 68 57 0.4655 0.3971 0.4737 1.06e-11
23 4cyc:A 66 54 0.4483 0.3939 0.4815 1.24e-11 1b8i:A
24 1zq3:P 68 56 0.4483 0.3824 0.4643 1.24e-11
25 1fjl:A 65 57 0.4310 0.3846 0.4386 1.26e-11 1fjl:B, 1fjl:C
26 4rbo:A 55 53 0.4138 0.4364 0.4528 2.09e-11 4rbo:D
27 3a01:F 61 57 0.4138 0.3934 0.4211 8.72e-11 3a01:B, 3lnq:A
28 3cmy:A 60 54 0.4310 0.4167 0.4630 3.21e-10
29 2lkx:A 68 57 0.4138 0.3529 0.4211 4.21e-10
30 8osb:E 62 56 0.3966 0.3710 0.4107 8.62e-10
31 4qtr:C 57 54 0.4310 0.4386 0.4630 1.42e-08 4qtr:A, 4qtr:B, 4qtr:D
32 8ejo:A 56 54 0.3448 0.3571 0.3704 1.89e-08 8ejo:B, 8ejp:A, 8ejp:B
33 6e8c:A 135 54 0.3793 0.1630 0.4074 1.33e-07 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 6e8c:A 135 48 0.2931 0.1259 0.3542 2.94e-05 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
35 5hod:A 61 58 0.3966 0.3770 0.3966 1.98e-07 5hod:D
36 9b8u:B 66 50 0.3448 0.3030 0.4000 9.04e-07 9b8u:A, 9b8u:C, 9b8u:D
37 1le8:A 53 42 0.2931 0.3208 0.4048 1.14e-05 1akh:A, 1yrn:A
38 1gt0:C 137 57 0.3448 0.1460 0.3509 9.29e-05 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
39 5wc9:A 136 57 0.3621 0.1544 0.3684 2.64e-04 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
40 8ik5:C 67 58 0.3448 0.2985 0.3448 8.34e-04 8ike:C, 8ilw:C
41 7xrc:C 134 45 0.3103 0.1343 0.4000 0.005 2xsd:C
42 4egc:A 539 34 0.2414 0.0260 0.4118 0.017
43 3d1n:I 150 52 0.3103 0.1200 0.3462 0.020 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
44 3l1p:A 147 44 0.2586 0.1020 0.3409 0.039 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
45 8g8e:X 140 43 0.2586 0.1071 0.3488 0.055 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
46 8bx1:A 127 43 0.2414 0.1102 0.3256 0.10
47 4j19:A 77 61 0.2931 0.2208 0.2787 0.67 4j19:B
48 1akh:B 78 55 0.2931 0.2179 0.3091 1.5 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
49 1mnm:C 77 53 0.2931 0.2208 0.3208 2.1 1mnm:D
50 6n9l:A 625 34 0.2414 0.0224 0.4118 6.0
51 3pih:A 836 34 0.2414 0.0167 0.4118 6.9
52 3eyf:A 215 34 0.2069 0.0558 0.3529 7.0 3eyf:C, 4hih:C, 4ptu:A, 7t1w:L4, 7t1x:L, 7t1x:L3, 7t1x:L4, 7t1x:L5
53 1za4:A 205 34 0.2414 0.0683 0.4118 8.3 2ouh:A, 2ouh:B
54 1lfu:P 82 34 0.1897 0.1341 0.3235 8.5 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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