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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RKKKVYTTPKKIKHKHRKHKLAVLTYYKVDNEGNVERLRRECPAPTCGAGIFMANMKDRQYCGKCHLTLK

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8c3a:h 70 70 1.0000 1.0000 1.0000 7.63e-48 8c3a:DS, 8cq7:h, 8cq7:DS, 8cqw:h, 8cqw:DS, 8cre:h, 8cre:DS, 8oeq:h, 8oeq:DS, 7pzy:g, 7q08:g, 7q0f:g, 7q0p:g, 7q0r:g
2 6fyx:f 74 69 0.7143 0.6757 0.7246 3.06e-30 6fyy:f, 6gsm:f, 6gsn:f, 8i7j:f, 5it7:f, 5it9:f, 3j80:f, 3j81:f, 3jam:f, 3jap:f, 8rw1:f, 8s8d:f, 8s8e:f, 8s8f:f, 8s8g:f, 8s8h:f, 8s8i:f, 8s8j:f
3 7old:Sf 74 68 0.7571 0.7162 0.7794 3.20e-30 7olc:Sf, 8oo0:Sf, 7r81:g2, 7z3n:Sf, 7z3o:Sf
4 5dat:e1 76 70 0.7714 0.7105 0.7714 3.47e-27 7a1g:N, 7b7d:N, 8bn3:E1, 8bqd:N, 8bqx:N, 8cah:N, 8cas:O, 5dat:E1, 5dc3:E1, 5dc3:e1, 5dge:E1, 5dge:e1, 5dgf:E1, 5dgf:e1, 5dgv:E1, 5dgv:e1, 6eml:N, 8eub:Bf, 8evp:Bf, 8evq:Bf, 8evr:Bf, 8evs:Bf, 8evt:Bf, 8ewb:Bf, 8ewc:Bf, 5fci:E1, 5fci:e1, 5fcj:E1, 5fcj:e1, 6gq1:AW, 6gqb:AW, 6gqv:AW, 6hhq:g, 6hhq:e1, 5i4l:E1, 5i4l:e1, 6i7o:N, 6i7o:Nb, 3j6x:31, 3j6y:31, 3j77:31, 3j78:31, 5juo:CC, 5jup:CC, 5jus:CC, 5jut:CC, 5juu:CC, 8k2d:Sf, 8k82:Sf, 5lyb:E1, 5lyb:e1, 5m1j:f2, 5mc6:N, 5mei:e1, 5mei:g, 7mpi:Bf, 7mpj:Bf, 7n8b:Bf, 5ndg:E1, 5ndw:E1, 5ndw:e1, 7nrc:SN, 7nrd:SN, 5obm:E1, 5obm:e1, 5on6:e1, 5on6:g, 7osa:eS31, 6q8y:N, 6rbe:f, 7rr5:Sf, 6s47:Bg, 6snt:f, 6sv4:N, 6sv4:Nb, 6sv4:Nc, 6t4q:Sf, 6t7i:Sf, 6t7t:Sf, 6t83:fb, 6t83:6, 5tbw:g, 5tbw:e1, 6tb3:N, 5tga:E1, 5tga:e1, 5tgm:E1, 5tgm:e1, 6tnu:N, 4u3m:E1, 4u3m:e1, 4u3n:E1, 4u3n:e1, 4u3u:E1, 4u3u:e1, 4u4n:E1, 4u4n:e1, 4u4o:E1, 4u4o:e1, 4u4q:E1, 4u4q:e1, 4u4r:E1, 4u4r:e1, 4u4u:E1, 4u4u:e1, 4u4y:E1, 4u4y:e1, 4u4z:E1, 4u4z:e1, 4u50:E1, 4u50:e1, 4u51:E1, 4u51:e1, 4u52:E1, 4u52:e1, 4u53:E1, 4u53:e1, 4u55:E1, 4u55:e1, 4u56:E1, 4u56:e1, 4u6f:E1, 4u6f:e1, 6wdr:f, 5wyj:Sg, 8y0u:Sf, 6z6j:Sf, 6z6k:Sf, 6zce:g, 7zpq:Af, 7zrs:Af, 6zu9:O, 7zuw:Af, 7zux:Df, 6zvi:Q, 7zw0:sN
5 4v6w:Af 80 69 0.6857 0.6000 0.6957 4.37e-24 6xu6:Af, 6xu7:Af, 6xu8:Af
6 8g5z:Sf 75 68 0.6857 0.6400 0.7059 5.48e-24 7a01:Q3, 7a09:U, 5a2q:f, 5aj0:Bf, 8bhf:g3, 8btk:AC, 4d5l:f, 4d61:f, 6d90:gg, 6d9j:gg, 9f1b:AC, 9f1c:AC, 9f1d:AC, 6fec:p, 5flx:f, 6g18:f, 6g51:f, 6g53:f, 6g5h:f, 6g5i:f, 8g5y:Sf, 8g60:Sf, 8g61:Sf, 8g6j:Sf, 8glp:Sf, 6gz3:Bf, 6gz4:Bf, 6gz5:Bf, 6hcf:g1, 6hcj:g2, 6hcm:g1, 6hcq:g2, 8ifd:3R, 8ife:3R, 6ip5:3R, 6ip6:3R, 6ip8:3R, 3j7p:Sf, 3j7r:Sf, 3jag:ff, 3jah:ff, 3jai:ff, 3jaj:Sf, 3jan:Sf, 7jqb:g, 7jqc:g, 5k0y:p, 8k2c:Sf, 7k5i:f, 4kzx:f, 4kzy:f, 4kzz:f, 5lks:Sf, 7ls1:U3, 7ls2:U3, 5lzs:ff, 5lzt:ff, 5lzu:ff, 5lzv:ff, 5lzw:ff, 5lzx:ff, 5lzy:ff, 5lzz:ff, 7mdz:ff, 7mq8:NT, 7mq9:NT, 7mqa:NT, 6mtb:ff, 6mtc:ff, 6mtd:ff, 6mte:ff, 7nwg:g2, 7nwh:ff, 7nwi:ff, 7o7y:AC, 7o7z:AC, 7o80:AC, 7o81:AC, 5oa3:f, 6ole:Sf, 6olf:Sf, 6olg:Bf, 6oli:Sf, 6olz:Bf, 6om0:Sf, 6om7:Sf, 8oz0:p, 8p03:f, 8p09:f, 8p2k:AC, 6p4g:g, 6p4h:g, 6p5i:g, 6p5j:g, 6p5k:g, 6p5n:g, 8pj1:k, 8pj2:k, 8pj3:k, 8pj4:k, 8pj5:k, 8pj6:k, 8ppk:f, 8ppl:Af, 8q7z:AC, 8q87:AC, 7qgg:Sf, 8qoi:Sf, 7qp6:k, 7qp7:k, 6qzp:Sf, 7r4x:f, 6r5q:0, 6r6g:0, 6r6p:0, 6r7q:0, 8scb:ff, 6sgc:g1, 7syg:g, 7syh:g, 7syi:g, 7syj:g, 7syk:g, 7syl:g, 7sym:g, 7syn:g, 7syo:g, 7syp:g, 7syq:g, 7syr:g, 7sys:g, 7syt:g, 7syu:g, 7syv:g, 7syw:g, 7syx:g, 5t2c:AH, 8t4s:f, 7toq:AS31, 7tor:AS31, 7tql:g, 4ug0:Sf, 4ujc:Cf, 4ujd:Cf, 4uje:Bf, 4v6x:Af, 5vyc:f1, 5vyc:f2, 5vyc:f3, 5vyc:f4, 5vyc:f5, 5vyc:f6, 6w2s:g, 6w2t:g, 7wtt:f, 7wtu:f, 7wtv:f, 7wtw:f, 7wtz:f, 7wu0:f, 6xa1:Sf, 7xnx:Sf, 7xny:Sf, 8xsx:Sf, 8xsy:Sf, 8xsz:Sf, 8xxl:Sf, 8xxm:Sf, 8xxn:Sf, 6y0g:Sf, 6yal:f, 6yam:f, 6yan:f, 6ybs:k, 8yoo:Sf, 8yop:Sf, 6z6l:Sf, 6z6m:Sf, 6z6n:Sf, 7zjw:SD, 7zjx:SD, 6zlw:g, 6zm7:Sf, 6zme:Sf, 6zmi:Sf, 6zmo:Sf, 6zmt:g, 6zmw:k, 6zn5:g, 6zoj:f, 6zol:f, 6zon:U, 6zp4:U, 6zuo:f, 6zv6:f, 6zvh:f, 6zvj:U, 6zvk:Q3, 6zxd:f, 6zxe:f, 6zxf:f, 6zxg:f, 6zxh:f
7 8rxh:Sf 80 71 0.5429 0.4750 0.5352 1.64e-22 6az1:f
8 4v88:Cf 76 49 0.5000 0.4605 0.7143 2.85e-21 4uer:9, 4v88:Af, 4v8y:A5, 4v8z:A5
9 6zj3:Sf 64 48 0.4714 0.5156 0.6875 5.14e-20
10 7ase:j 79 59 0.4857 0.4304 0.5763 8.24e-19 5opt:j, 8ova:A9, 4v8m:A9
11 9bh5:Af 50 49 0.4143 0.5800 0.5918 2.10e-18 9cai:Af
12 4v92:Bf 64 48 0.4429 0.4844 0.6458 2.61e-18
13 4v7e:Bf 71 66 0.6571 0.6479 0.6970 1.44e-17 8auv:N, 8b2l:N1, 8r57:f
14 4bts:A9 93 59 0.4571 0.3441 0.5424 2.68e-15 4bts:B9, 4bts:C9, 4bts:D9
15 4v5o:A9 98 59 0.4571 0.3265 0.5424 5.40e-15 4v5o:B9
16 7wtx:f 61 68 0.5857 0.6721 0.6029 1.87e-14 9bkd:k, 9bln:k
17 6woo:ff 44 56 0.4429 0.7045 0.5536 5.08e-14 8ccs:8, 8cdl:8, 8cdr:8, 8ceh:8, 8cf5:8, 8cg8:8, 8cgn:8, 8civ:8, 8cku:8, 8cmj:8, 7osm:eS31
18 5ndg:e1 45 70 0.4714 0.7333 0.4714 4.60e-13
19 6uz7:f 44 55 0.4000 0.6364 0.5091 1.09e-09
20 5xxu:f 45 46 0.3429 0.5333 0.5217 7.21e-09
21 7qvp:Rh 41 55 0.3857 0.6585 0.4909 1.74e-06 6y57:sh
22 8p5d:SFF 58 47 0.2286 0.2759 0.3404 3.24e-06 8p60:SFF, 8p60:RFF, 7qca:SFF
23 6tmf:Z 50 36 0.2571 0.3600 0.5000 5.03e-05
24 5jb3:Y 50 37 0.2571 0.3600 0.4865 5.86e-05 5jbh:Y, 6sw9:Y, 6swc:Y, 6swe:Y, 4v4n:BY, 4v6u:AY, 7zag:Y, 7zah:Y, 7zai:Y, 7zhg:Y
25 8rxx:Sf 46 65 0.3143 0.4783 0.3385 1.47e-04
26 2k4x:A 55 37 0.2286 0.2909 0.4324 7.98e-04
27 6rm3:SFF 68 61 0.3000 0.3088 0.3443 0.026
28 8v83:b 423 28 0.1571 0.0260 0.3929 0.97 6elz:b, 6em1:b, 6em5:b, 7ohp:b, 7ohr:b, 7ohs:b, 7ohu:b, 7ohv:b, 8v84:b
29 2jiz:G 192 31 0.1714 0.0625 0.3871 1.5 4asu:G, 2ck3:G, 2jdi:G, 2jiz:N, 4tt3:G, 4z1m:G
30 6ylg:b 613 26 0.1571 0.0179 0.4231 2.3 7nac:b, 7of1:b, 7r7a:b, 6ylh:b
31 8hfr:rA 647 26 0.1571 0.0170 0.4231 2.3 7bt6:b, 7btb:b, 6c0f:W, 6ft6:b, 3jct:b, 5jcs:o, 6m62:b, 6n8j:b, 6n8k:b, 7nad:b, 7oh3:b, 7ohq:b, 7oht:b, 7r72:b, 7u0h:b, 7ug6:b, 7uoo:b, 7uqb:b, 7uqz:b, 7v08:b, 4v7f:o, 8v87:b, 6ylx:b, 6yly:b, 7z34:b
32 8c4y:AAA 312 36 0.1571 0.0353 0.3056 3.0 8oei:A, 8oem:A, 8oen:A, 8ogg:A, 8rk1:A
33 6n8l:b 248 26 0.1571 0.0444 0.4231 3.0
34 5caw:C 315 31 0.1714 0.0381 0.3871 3.3 5caw:A
35 5ey5:A 261 39 0.1571 0.0421 0.2821 3.7 5ey5:C
36 7eo3:A 282 12 0.1143 0.0284 0.6667 6.7
37 3mbe:A 184 28 0.1429 0.0543 0.3571 9.0 1f3j:A, 1f3j:D, 3mbe:E, 7qhp:A, 7rdv:A, 7z50:A, 7z50:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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