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BioLiP
>protein
RKFACVECRQQKSKCDAHERAPEPCTKCAKKNVPCILKRDFRRTYKRARNEAIEKRFKELTRTL

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2er8:A 68 64 1.0000 0.9412 1.0000 5.52e-41 2er8:B, 2er8:C, 2er8:D, 2ere:A, 2ere:B, 2erg:A, 2erg:B
2 1pyi:A 88 62 0.3281 0.2386 0.3387 0.14 1pyi:B
3 7b0n:G 694 36 0.2031 0.0187 0.3611 0.28 6gcs:A, 7o6y:A, 7o71:A, 6rfq:A, 6rfr:A, 6rfs:A, 6y79:A, 6yj4:G
4 7vqo:A 1180 49 0.2188 0.0119 0.2857 0.38 7vqo:B, 7vqo:C, 7vqo:D
5 7yoj:A 867 47 0.2031 0.0150 0.2766 1.5
6 6h8k:A 628 40 0.2031 0.0207 0.3250 1.6
7 1cld:A 33 33 0.2031 0.3939 0.3939 4.7
8 1ajy:A 71 33 0.1875 0.1690 0.3636 4.8 1ajy:B, 1zme:C, 1zme:D
9 4i7w:A 294 21 0.1562 0.0340 0.4762 5.1 4i7w:B
10 5zln:B 753 19 0.1094 0.0093 0.3684 6.9 3wpg:A, 3wph:A, 3wpi:A, 5zln:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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