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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLAMPTTVDGCVRTPSLVINDLIYAYTSNLITRGCQDIGKS
YQVLQIGIITVNVPDLNPRISHTFNINDNRKSCSLALLNTDVYQLCSTPKVDERSDYASSGIEDIVLDIVNHDGSISTTR
FKNNNISFDQPYAALYPSVGPGIYYKGKIIFLGYGGLEHPINENAICNTTGCPGKTQRDCNQASHSPWFSDRRMVNSIIV
VDKGLNSIPKLKVWTISMRQNYWGSEGRLLLLGNKIYIYTRSTSWHSKLQLGIIDITDYSDIRIKWTWHNVLSRPGNNEC
PWGHSCPDGCITGVYTDAYPLNPTGSIVSSVILDSQKSRVNPVITYSTATERVNELAIRNKTLSAGYTTTSCITHYNKGY
CFHIVEINHKSLDTFQPMLFKTEIPKSCS

The query sequence (length=429) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4mza:B 437 432 0.9977 0.9794 0.9907 0.0 6c0m:A, 6c0m:B, 5kv8:A, 5kv8:B, 5kv9:B, 4mza:A, 4mze:A, 4mze:B, 1v2i:A, 1v2i:B, 1v3b:A, 1v3b:B, 1v3c:A, 1v3c:B, 1v3d:A, 1v3d:B, 1v3e:A, 1v3e:B, 4wef:A, 4wef:B, 4xjq:A, 4xjq:B, 4xjr:A, 4xjr:B
2 1e8u:B 449 413 0.2844 0.2717 0.2954 8.73e-41 7bwu:B, 7bwu:D, 7bwu:A, 7bwu:C, 1e8t:A, 1e8u:A, 1e8v:A, 1e8v:B, 1usr:A, 1usr:B, 1usx:A, 1usx:B, 1usx:C
3 6jjm:A 452 425 0.2797 0.2655 0.2824 1.91e-40 5b2d:A, 5b2d:B, 6jjm:B, 6jjn:A, 6jjn:B
4 4jf7:A 501 425 0.2844 0.2435 0.2871 1.55e-37 4jf7:D, 4jf7:B, 4jf7:C, 1z4v:A, 1z4w:A, 1z4x:A, 1z4y:A, 1z4z:A, 1z50:A
5 7ty0:D 485 442 0.2727 0.2412 0.2647 2.51e-22 8ja5:A, 7txz:B, 2vwd:A, 2vwd:B, 8xc4:B
6 6pdl:E 421 158 0.1142 0.1164 0.3101 4.50e-20 6pdl:C, 7syy:A
7 6sg8:B 381 395 0.2098 0.2362 0.2278 5.16e-16 6sg8:A
8 8tvi:A 513 387 0.1818 0.1520 0.2016 1.19e-13 8tvi:B, 8tvi:C, 8tvi:D
9 7eto:a 1297 83 0.0490 0.0162 0.2530 9.4 7et3:a, 7etj:a
10 7fi0:A 308 67 0.0396 0.0552 0.2537 9.4 7fi1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218