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BioLiP
>protein
RIPLWLIATVGGTLALTVVGIFFYGSYSGVGSSL

The query sequence (length=34) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8xr6:J 34 34 1.0000 1.0000 1.0000 3.74e-17 8xr6:j
2 4yuu:j2 33 33 0.7059 0.7273 0.7273 1.64e-10 4yuu:J1, 4yuu:j1
3 5b5e:j 40 34 0.6176 0.5250 0.6176 2.77e-10 3a0b:J, 2axt:j, 5b5e:J, 5b66:J, 5b66:j, 7cji:J, 7cji:j, 7cjj:J, 7cjj:j, 7cou:J, 7cou:j, 7d1t:J, 7d1t:j, 7d1u:J, 7d1u:j, 5e79:J, 5e79:j, 5e7c:J, 5e7c:j, 7eda:J, 9evx:j, 8gn0:J, 8gn0:j, 8gn1:J, 8gn1:j, 8gn2:J, 8gn2:j, 5gth:J, 5gth:j, 5gti:J, 5gti:j, 5h2f:J, 5h2f:j, 4il6:J, 4il6:j, 8ir5:J, 8ir5:j, 8ir6:J, 8ir6:j, 8ir7:J, 8ir7:j, 8ir8:J, 8ir8:j, 8ir9:J, 8ir9:j, 8ira:J, 8ira:j, 8irb:J, 8irb:j, 8irc:J, 8irc:j, 8ird:J, 8ird:j, 8ire:J, 8ire:j, 8irf:J, 8irf:j, 8irg:J, 8irg:j, 8irh:J, 8irh:j, 8iri:J, 8iri:j, 6jlj:J, 6jlj:j, 6jlk:J, 6jlk:j, 6jll:j, 6jll:J, 6jlm:J, 6jlm:j, 6jln:J, 6jln:j, 6jlo:J, 6jlo:j, 6jlp:J, 6jlp:j, 3kzi:J, 4pbu:J, 4pbu:j, 7rf4:J, 4rvy:J, 4rvy:j, 4ub6:J, 4ub6:j, 4ub8:J, 4ub8:j, 5v2c:J, 5v2c:j, 4v82:BJ, 6w1q:J, 5ws5:J, 5ws5:j, 5ws6:J, 5ws6:j, 3wu2:J, 3wu2:j, 7yq2:J, 7yq2:j, 7yq7:J, 7yq7:j, 5zzn:J, 5zzn:j
4 6j3y:J 34 34 0.6471 0.6471 0.6471 5.11e-10 6j3y:j, 6j3z:J, 6j3z:j, 6j40:J, 6j40:j, 7vd5:J, 7vd5:j
5 7pin:J 36 34 0.6765 0.6389 0.6765 1.37e-09 7pin:J1, 7piw:J1, 7pnk:J
6 8xqw:C 690 26 0.3824 0.0188 0.5000 0.30
7 4g10:A 263 19 0.2647 0.0342 0.4737 1.8 4yav:A
8 5yjj:A 442 25 0.2941 0.0226 0.4000 4.8 5yjj:B, 5yjj:C, 5yjj:D, 5yjj:E, 5yjj:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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