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BioLiP
>protein
RICYIHKASLPRATKTCVENTCYKMFIRTQREYISERGCGCPTAMWPYQTECCKGDRCNK

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8we8:B 60 60 1.0000 1.0000 1.0000 9.65e-41
2 9avv:G 62 58 0.4667 0.4516 0.4828 6.19e-13 9avv:F, 9awk:F, 9awk:G
3 5ebx:A 62 62 0.4500 0.4355 0.4355 1.67e-10 6ebx:B
4 1v6p:A 62 60 0.4000 0.3871 0.4000 9.53e-08 1v6p:B
5 2bhi:A 60 54 0.3500 0.3500 0.3889 3.01e-04 2bhi:B, 1h0j:A, 1h0j:B, 1h0j:C, 1xt3:A
6 4q2h:A 346 39 0.2167 0.0376 0.3333 0.33 4q2h:B
7 8jgj:A 684 18 0.1167 0.0102 0.3889 2.1 8jgj:B, 8jgk:A, 8jgk:B, 8jgl:A, 8jgl:B, 8jgv:A, 8jgv:B
8 8f5o:C 1179 26 0.1833 0.0093 0.4231 2.7 8f5p:C
9 5mg9:A 65 45 0.2667 0.2462 0.3556 3.9
10 7a6q:A 489 30 0.1833 0.0225 0.3667 4.1 7a6q:B, 5fhz:A, 5fhz:B, 5fhz:C, 5fhz:D, 5fhz:E, 5fhz:G, 5fhz:H, 7qk8:A, 7qk8:B, 7qk9:A, 7qk9:B, 6s6w:A, 6s6w:B, 6te5:A, 6te5:B, 6tgw:A, 6tgw:B, 6tgw:C, 6tgw:D, 6try:A, 6try:B
11 8vy8:B 75 60 0.3500 0.2800 0.3500 4.8 1abt:A, 2btx:A, 1bxp:A, 1haa:A, 1haj:A, 5hbv:A, 1hc9:A, 1hc9:B, 1hoy:A, 1idg:A, 1idh:A, 1jbd:A, 1kc4:A, 1kl8:A, 1l4w:A, 1ljz:A, 2qc1:A, 1rgj:A, 6uwz:G, 8vy8:A, 8vy8:E, 8vy8:G
12 6fml:G 731 33 0.1833 0.0150 0.3333 6.8 8av6:G
13 7xpo:A 344 23 0.1500 0.0262 0.3913 7.3 7xpo:B, 7xpp:B, 7xpp:A, 7xpq:A, 7xpq:B
14 8oo7:G 704 33 0.1833 0.0156 0.3333 7.6 8oop:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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