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BioLiP
>protein
RGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVEGSLRTRKWQG
QDGQDRYTTEIVVDINGNMQLLG

The query sequence (length=103) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6irq:C 104 106 0.9806 0.9712 0.9528 6.69e-67 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
2 1eqq:B 120 111 0.7864 0.6750 0.7297 1.70e-55 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
3 5odn:D 106 91 0.5340 0.5189 0.6044 1.57e-34 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
4 5odp:G 100 82 0.4563 0.4700 0.5732 8.17e-27 5odp:A
5 3ulp:C 116 105 0.3883 0.3448 0.3810 3.55e-24 3ulp:A, 3ulp:B, 3ulp:D
6 6bhx:C 102 89 0.3592 0.3627 0.4157 5.57e-18 6bhx:A, 6bhx:B
7 2vw9:A 108 98 0.3981 0.3796 0.4184 1.25e-16 2vw9:B
8 8gw5:A 99 92 0.3301 0.3434 0.3696 3.83e-16 7ym1:A
9 6rup:A 111 102 0.3592 0.3333 0.3627 4.57e-16 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
10 8uzt:B 100 98 0.3689 0.3800 0.3878 2.57e-15
11 7dep:B 102 97 0.3398 0.3431 0.3608 1.21e-12
12 3udg:C 214 95 0.3592 0.1729 0.3895 3.88e-11 3udg:B, 3udg:A
13 3udg:C 214 77 0.2816 0.1355 0.3766 9.67e-09 3udg:B, 3udg:A
14 3a5u:A 118 102 0.3398 0.2966 0.3431 6.36e-11 3a5u:B
15 3vdy:A 101 96 0.3010 0.3069 0.3229 2.31e-10 3vdy:B
16 5jrc:C 186 51 0.1553 0.0860 0.3137 0.18 5jrc:A, 5jrc:D, 5jre:D, 5jre:H, 5jre:A, 5jre:B, 5jre:C, 5jre:F, 5jre:E, 5jre:G
17 5oes:E 448 66 0.1845 0.0424 0.2879 0.37 5oes:A, 5oes:B, 5oes:C, 5oes:D, 5oes:F
18 1uv4:A 291 51 0.1553 0.0550 0.3137 2.3
19 8c29:R 219 43 0.1456 0.0685 0.3488 2.6 8c29:r
20 7m2k:A 169 28 0.1068 0.0651 0.3929 2.9 7m2k:C, 7m2k:E, 7m2k:G, 4mdk:A, 4mdk:B, 4mdk:C, 4mdk:D, 3rz3:A, 3rz3:B, 3rz3:C, 3rz3:D
21 7fh6:A 653 75 0.1748 0.0276 0.2400 6.5 7fh7:A, 7fh8:A, 7ron:A, 7roo:A
22 3ggl:A 161 51 0.1650 0.1056 0.3333 8.1 6oe2:A
23 8r5h:C 203 28 0.0971 0.0493 0.3571 9.0 6nyo:A, 8pql:C, 8q7r:C
24 6sj2:B 503 54 0.1650 0.0338 0.3148 9.7 6sj0:A, 6sj0:B, 6sj1:A, 6sj1:B, 6sj2:A, 6sj3:A, 6sj3:B, 6sj4:A, 6sj4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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