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BioLiP
>protein
RGVNKVILIGNLGDKPELRYTGSGTAVCNMSLATNETYTDSDGNEVQNTEWHDVVAWGRLGEICNEYLKKGSQVYFEGKL
QTRSSTEVKAQEMMFLDSN

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5odp:G 100 99 0.9798 0.9700 0.9798 6.34e-68 5odp:A
2 5odn:D 106 106 0.8586 0.8019 0.8019 1.25e-53 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
3 1eqq:B 120 93 0.5152 0.4250 0.5484 2.26e-31 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
4 6irq:C 104 83 0.4949 0.4712 0.5904 7.06e-29 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
5 6bhx:C 102 106 0.3939 0.3824 0.3679 2.61e-17 6bhx:A, 6bhx:B
6 3ulp:C 116 85 0.3232 0.2759 0.3765 7.03e-17 3ulp:A, 3ulp:B, 3ulp:D
7 7dep:B 102 102 0.3737 0.3627 0.3627 4.36e-15
8 2vw9:A 108 77 0.3232 0.2963 0.4156 5.15e-15 2vw9:B
9 3vdy:A 101 100 0.3636 0.3564 0.3600 1.15e-14 3vdy:B
10 6rup:A 111 107 0.3636 0.3243 0.3364 1.32e-14 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
11 8uzt:B 100 100 0.3535 0.3500 0.3500 1.03e-13
12 3udg:C 214 89 0.3434 0.1589 0.3820 1.01e-11 3udg:B, 3udg:A
13 3udg:C 214 105 0.3939 0.1822 0.3714 3.82e-08 3udg:B, 3udg:A
14 8gw5:A 99 106 0.3333 0.3333 0.3113 7.15e-11 7ym1:A
15 3a5u:A 118 92 0.3333 0.2797 0.3587 2.18e-10 3a5u:B
16 1zm8:A 239 64 0.1717 0.0711 0.2656 0.67
17 5gqo:A 97 50 0.1818 0.1856 0.3600 2.4
18 6he3:A 422 32 0.1515 0.0355 0.4688 3.1 6hdz:A, 6hdz:B, 6he1:A, 6he1:B, 6he3:B
19 4rku:G 84 16 0.0909 0.1071 0.5625 4.3
20 5zji:G 97 16 0.0909 0.0928 0.5625 4.6
21 4r3a:B 278 29 0.1212 0.0432 0.4138 5.6
22 8b80:A 474 28 0.1111 0.0232 0.3929 5.8 8b81:A, 8b81:B, 5okb:B, 5okb:C, 5okb:D, 5oke:C, 5oke:D, 5oke:A, 5oke:B, 5okg:C, 5okg:D, 5okg:A, 5okg:B, 5okk:A, 5okk:B, 5okq:A, 5okq:B, 5okr:A, 5okr:B, 5oks:A, 5oks:B, 4zen:A, 4zen:B, 4zep:A, 4zep:B, 4zfm:D, 4zfm:A, 4zfm:B, 4zfm:C
23 6sl4:A 150 60 0.1818 0.1200 0.3000 6.1 6sl4:B, 6sl4:C
24 8yik:A 379 47 0.1515 0.0396 0.3191 8.0
25 5yk6:A 239 64 0.1818 0.0753 0.2812 9.4 5yk7:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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