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BioLiP
>protein
RGSHMTEDEIRKLRKLLEEAEKKLYKLEDKTRRSEEISDDPKAQSLQLIAESLMLIAESLLIIAISLLLSS

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6tj1:A 71 71 1.0000 1.0000 1.0000 9.64e-43 6tms:D, 6tms:J
2 5u35:A 125 22 0.1690 0.0960 0.5455 0.17 5u35:B
3 6xwk:BBB 172 57 0.2535 0.1047 0.3158 0.21
4 7aia:AAA 259 59 0.2817 0.0772 0.3390 0.23
5 5mrc:D 252 73 0.3239 0.0913 0.3151 0.35 3j6b:D, 5mre:D, 5mrf:D
6 3k6j:A 430 46 0.2113 0.0349 0.3261 0.38
7 2fzn:A 449 51 0.2113 0.0334 0.2941 1.0
8 7njn:C 536 32 0.1831 0.0243 0.4062 1.4 6foc:A, 6foc:B, 6foc:C, 8g08:B, 8g08:C, 8g08:A, 8g09:A, 8g09:B, 8g09:C, 8g0a:A, 8g0a:B, 8g0a:C, 8g0c:B, 8g0c:C, 8g0c:A, 8g0d:C, 8g0d:A, 8g0d:B, 8g0e:A, 8g0e:B, 8g0e:C, 7jg5:A, 7jg5:B, 7jg5:C, 7jga:A, 7jga:B, 7jga:C, 7njk:A, 7njk:B, 7njk:C, 7njl:A, 7njl:B, 7njl:C, 7njm:A, 7njm:B, 7njm:C, 7njn:A, 7njn:B, 7njo:A, 7njo:B, 7njo:C, 7njp:A, 7njp:B, 7njp:C, 7njq:A, 7njq:B, 7njq:C, 7njr:A, 7njr:B, 7njr:C, 7njs:A, 7njs:B, 7njs:C, 7nk7:A, 7nk7:B, 7nk7:C, 7nkh:A, 7nkh:B, 7nkh:C, 7nkj:A, 7nkj:B, 7nkj:C, 7y5a:A, 7y5a:B, 7y5a:C, 7y5b:A, 7y5b:B, 7y5b:C, 7y5c:A, 7y5c:B, 7y5c:C
9 5n1q:A 549 23 0.1549 0.0200 0.4783 1.4 5n1q:D, 5n28:A, 5n28:D, 5n2a:A
10 4x3n:A 259 44 0.2113 0.0579 0.3409 1.8 4x3n:B, 4x3n:C
11 5m4b:A 439 25 0.1549 0.0251 0.4400 4.8 5m46:A, 5m49:A, 5m4d:A
12 2c7j:B 172 24 0.0986 0.0407 0.2917 5.8 2c7k:B, 2c7l:B
13 7cce:A 159 18 0.1408 0.0629 0.5556 6.4
14 4k9q:A 531 33 0.1549 0.0207 0.3333 7.2 4k9q:B
15 8swn:A 1135 39 0.1690 0.0106 0.3077 7.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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