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BioLiP
>protein
RGRIPGRQWIGKHRRPRFVSLRAKQNMIRRLEIEAENHYWLSMPYMTREQERGHAAVRRREAFEAIKAAATSKFPPHRFI
ADQLDHLNVTKKWS

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7a5f:o3 94 94 1.0000 1.0000 1.0000 1.15e-66 7a5g:o3, 7a5h:o, 7a5i:o3, 7a5j:o, 7a5k:o3, 8any:o, 6i9r:o, 3j7y:o, 3j9m:o, 8k2a:L6, 8k2b:L6, 7l08:o, 7l20:o, 6nu2:o, 6nu3:o, 7o9k:o, 7o9m:o, 7odr:o, 7ods:o, 7odt:o, 7of0:o, 7of2:o, 7of3:o, 7of4:o, 7of5:o, 7of6:o, 7of7:o, 7og4:o, 7oi6:o, 7oi7:o, 7oi8:o, 7oi9:o, 7oia:o, 7oib:o, 7oic:o, 7oid:o, 7oie:o, 8oir:Be, 8oit:Be, 5ool:o, 5oom:o, 7pd3:o, 8pk0:o, 7po4:o, 7qh6:o, 7qh7:o, 7qi4:o, 7qi5:o, 7qi6:o, 8qsj:o, 8qu5:o, 6vlz:o, 6vmi:o, 8xt0:L6, 8xt1:L6, 8xt2:L6, 8xt3:L6, 6zm5:o, 6zm6:o, 6zs9:o, 6zsa:o, 6zsb:o, 6zsc:o, 6zsd:o, 6zse:o, 6zsg:o
2 5aj4:Bt 94 94 0.7234 0.7234 0.7234 5.07e-39 6gaw:Bt, 6gb2:Bt, 7nqh:Bt, 7nql:Bt, 7nsh:Bt, 7nsi:Bt, 7nsj:Bt, 8oin:Be, 8oiq:Be, 6ydp:Bt, 6ydw:Bt
3 4mdh:A 333 30 0.1170 0.0330 0.3667 1.5 4mdh:B, 5mdh:A, 5mdh:B, 7rm9:A
4 4nuf:A 549 37 0.1596 0.0273 0.4054 5.1
5 5wti:Z 982 18 0.1064 0.0102 0.5556 6.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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