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BioLiP
>protein
RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1akh:B 78 58 1.0000 0.7436 1.0000 1.09e-37 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
2 1mnm:C 77 58 1.0000 0.7532 1.0000 1.34e-37 1mnm:D
3 1lfu:P 82 49 0.2759 0.1951 0.3265 7.97e-06 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
4 4xrm:B 64 51 0.2586 0.2344 0.2941 4.03e-05 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
5 6fqp:A 67 51 0.3103 0.2687 0.3529 2.72e-04 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E
6 4egc:A 539 46 0.2586 0.0278 0.3261 5.04e-04
7 1zq3:P 68 53 0.3103 0.2647 0.3396 0.002
8 3cmy:A 60 49 0.2759 0.2667 0.3265 0.20
9 5eea:G 63 53 0.3276 0.3016 0.3585 0.28 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
10 4j19:A 77 74 0.4138 0.3117 0.3243 0.47 4j19:B
11 3a01:A 78 51 0.2931 0.2179 0.3333 0.62 3a01:E
12 2lkx:A 68 51 0.2759 0.2353 0.3137 0.66
13 3d1n:I 150 50 0.2414 0.0933 0.2800 0.87 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
14 1ig7:A 58 53 0.2931 0.2931 0.3208 1.8
15 3rkq:A 58 53 0.2931 0.2931 0.3208 1.9 3rkq:B
16 5zjr:A 64 35 0.2241 0.2031 0.3714 2.1 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
17 4rbo:A 55 33 0.2069 0.2182 0.3636 2.2 4rbo:D
18 2me6:A 71 51 0.2931 0.2394 0.3333 2.3
19 5z6t:A 317 48 0.2586 0.0473 0.3125 2.5 5z6t:B
20 8jw0:l 253 35 0.1724 0.0395 0.2857 2.6
21 2ld5:A 67 53 0.2931 0.2537 0.3208 3.2
22 7xrc:C 134 45 0.2586 0.1119 0.3333 3.4 2xsd:C
23 5flv:M 229 53 0.2931 0.0742 0.3208 3.8 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
24 2f4m:A 295 18 0.1724 0.0339 0.5556 3.8 2f4o:A
25 8pna:A 67 31 0.1897 0.1642 0.3548 3.9 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
26 1nk2:P 77 53 0.3103 0.2338 0.3396 4.4 1nk3:P
27 8hku:AL4P 251 13 0.1552 0.0359 0.6923 6.2 8hkv:AL4P, 8hky:AL4P, 8hkz:AL4P, 8hl1:AL4P, 8hl2:AL4P, 8hl3:AL4P, 8hl4:AL4P, 8hl5:AL4P
28 1otw:A 255 18 0.1552 0.0353 0.5000 6.2 3hlx:A, 3hlx:D, 3hml:A, 3hml:B, 3hnh:A, 4ny7:A, 4ny7:B, 1otw:B
29 6es3:K 72 33 0.2069 0.1667 0.3636 6.9 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
30 1b72:A 68 35 0.2069 0.1765 0.3429 8.3
31 1k8c:B 319 47 0.2414 0.0439 0.2979 8.4 1k8c:A, 1k8c:C, 1k8c:D, 1mi3:A, 1mi3:B, 1mi3:C, 1mi3:D, 1r38:A, 1r38:B, 1r38:C, 1r38:D, 1sm9:A, 1sm9:B, 1sm9:C, 1sm9:D, 1ye4:A, 1ye4:B, 1ye4:C, 1ye4:D, 1ye6:A, 1ye6:B, 1ye6:C, 1ye6:D, 1z9a:A, 1z9a:B, 1z9a:C, 1z9a:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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