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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPELADLLSGEPL

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1akh:B 78 74 0.9595 0.9103 0.9595 8.26e-48 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
2 1mnm:C 77 58 0.7432 0.7143 0.9483 1.02e-35 1mnm:D
3 1lfu:P 82 69 0.2568 0.2317 0.2754 1.52e-04 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
4 4xrm:B 64 50 0.2027 0.2344 0.3000 0.002 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
5 6fqp:A 67 50 0.2432 0.2687 0.3600 0.008 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E
6 4egc:A 539 47 0.1892 0.0260 0.2979 0.055
7 5eea:G 63 55 0.2432 0.2857 0.3273 0.73 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
8 2lkx:A 68 55 0.2432 0.2647 0.3273 1.6
9 6m3d:C 108 47 0.2027 0.1389 0.3191 2.5 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
10 5z6t:A 317 51 0.2162 0.0505 0.3137 2.7 5z6t:B
11 2me6:A 71 55 0.2568 0.2676 0.3455 3.6
12 1k8c:B 319 50 0.2027 0.0470 0.3000 3.9 1k8c:A, 1k8c:C, 1k8c:D, 1mi3:A, 1mi3:B, 1mi3:C, 1mi3:D, 1r38:A, 1r38:B, 1r38:C, 1r38:D, 1sm9:A, 1sm9:B, 1sm9:C, 1sm9:D, 1ye4:A, 1ye4:B, 1ye4:C, 1ye4:D, 1ye6:A, 1ye6:B, 1ye6:C, 1ye6:D, 1z9a:A, 1z9a:B, 1z9a:C, 1z9a:D
13 8p5r:C 1109 50 0.2432 0.0162 0.3600 3.9 6i2q:A, 6i2r:A, 6i2r:C, 6i2s:A, 8p5r:A, 8p5r:B, 8p5r:D, 8p5r:E, 8p5r:F, 6r2b:A, 6r2b:D, 6r2c:A, 6r2c:B, 6r2c:C, 6r2c:D, 6r2d:A, 6r2d:B, 6r2d:C, 6r2d:D, 2xt6:A, 2xt6:B, 2xta:A, 2xta:B, 2xta:C, 2xta:D, 2y0p:D, 2yic:A, 2yic:B, 2yic:C, 2yic:D, 2yid:A, 2yid:B, 2yid:C, 2yid:D, 3zhq:A, 3zhq:B, 3zhq:C, 3zhq:D, 3zhr:A, 3zhr:B, 3zhr:C, 3zhr:D, 3zhs:A, 3zhs:B, 3zhs:C, 3zhs:D, 3zht:A, 3zht:B, 3zht:C, 3zht:D, 3zhu:A, 3zhu:B, 3zhu:C, 3zhu:D, 3zhv:A, 3zhv:B, 3zhv:C, 3zhv:D
14 3cmy:A 60 51 0.2027 0.2500 0.2941 4.1
15 2y0p:C 856 50 0.2432 0.0210 0.3600 4.3 6r29:A, 6r29:B, 6r2a:A, 6r2a:B, 6r2b:B, 6r2b:C, 2y0p:A, 2y0p:B
16 8jw0:l 253 35 0.1351 0.0395 0.2857 6.5
17 1ig7:A 58 55 0.2297 0.2931 0.3091 6.7
18 6es3:K 72 35 0.1757 0.1806 0.3714 7.5 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
19 5a2q:g 314 55 0.1892 0.0446 0.2545 8.0 7a01:a3, 7a09:V, 5aj0:Bg, 9bdl:ARAC, 9bdn:ARAC, 9bdp:ARAC, 8bhf:h3, 9bkd:c, 9bln:c, 8btk:AF, 7cpu:Sg, 7cpv:Sg, 4d5l:g, 4d61:g, 6d90:hh, 6d9j:hh, 9f1b:AF, 9f1c:AF, 9f1d:AF, 6fec:m, 5flx:g, 6g18:g, 6g51:g, 6g53:g, 6g5h:g, 6g5i:g, 8g5y:Sg, 8g5z:Sg, 8g60:Sg, 8g61:Sg, 8g6j:Sg, 8glp:Sg, 6gz3:Bg, 6gz4:Bg, 6gz5:Bg, 6hcf:h1, 6hcj:h2, 6hcm:h1, 6hcq:h2, 8ifd:3F, 8ife:3F, 6ip5:3F, 6ip6:3F, 6ip8:3F, 3j7p:Sg, 3j7r:Sg, 3jag:gg, 3jah:gg, 3jai:gg, 3jaj:Sg, 3jan:Sg, 8jdj:AR, 8jdk:AR, 8jdl:AR, 8jdm:AR, 7jqb:h, 7jqc:h, 5k0y:m, 8k2c:Sg, 7k5i:g, 4kzx:g, 4kzy:g, 4kzz:g, 5lks:Sg, 7ls1:I3, 7ls2:I3, 5lzs:gg, 5lzt:gg, 5lzu:gg, 5lzv:gg, 5lzw:gg, 5lzx:gg, 5lzy:gg, 5lzz:gg, 7mdz:gg, 6mtb:gg, 6mtc:gg, 6mtd:gg, 6mte:gg, 7nwg:h2, 7nwh:gg, 7nwi:gg, 7o7y:AF, 7o7z:AF, 7o80:AF, 7o81:AF, 5oa3:g, 6ole:Sg, 6olf:Sg, 6olg:Bg, 6oli:Sg, 6olz:Bg, 6om0:Sg, 6om7:Sg, 7oya:g2, 7oyb:g2, 7oyc:g2, 7oyd:Gg, 8oz0:k, 8p03:g, 8p09:g, 8p2k:AF, 6p4g:h, 6p4h:h, 6p5i:h, 6p5j:h, 6p5k:h, 6p5n:h, 8pj1:c, 8pj2:c, 8pj3:c, 8pj4:c, 8pj5:c, 8pj6:c, 8ppk:g, 8ppl:Ag, 8q7z:AF, 8q87:AF, 7qgg:Sg, 8qoi:Sg, 7qp6:c, 7qp7:c, 7qvp:Sg, 6qzp:Sg, 7r4x:g, 6r5q:6, 6r6g:6, 6r6p:6, 6r7q:6, 8scb:gg, 6sgc:h1, 7syg:h, 7syh:h, 7syi:h, 7syj:h, 7syk:h, 7syl:h, 7sym:h, 7syn:h, 7syo:h, 7syp:h, 7syq:h, 7syr:h, 7sys:h, 7syt:h, 7syu:h, 7syv:h, 7syw:h, 7syx:h, 5t2c:AI, 8t4s:g, 7toq:ARAC, 7tor:ARAC, 7tql:j, 7ucj:Gg, 7uck:Gg, 4ug0:Sg, 4ujc:Cg, 4ujd:Cg, 4uje:Bg, 4v5z:Aa, 4v6x:Ag, 5vyc:g1, 5vyc:g2, 5vyc:g3, 5vyc:g4, 5vyc:g5, 5vyc:g6, 6w2s:h, 6w2t:h, 6xa1:Sg, 7xnx:Sg, 7xny:Sg, 8xsx:Sg, 8xsy:Sg, 8xsz:Sg, 8xxl:Sg, 8xxm:Sg, 8xxn:Sg, 6y0g:Sg, 8y0w:Sg, 8y0x:Sg, 6y2l:Sg, 6yal:g, 6yam:g, 6yan:g, 6ybs:c, 8yoo:Sg, 8yop:Sg, 6z6l:Sg, 6z6m:Sg, 6z6n:Sg, 7zjw:SG, 7zjx:SG, 6zlw:j, 6zm7:Sg, 6zme:Sg, 6zmi:Sg, 6zmo:Sg, 6zmt:j, 6zmw:c, 6zn5:j, 6zoj:g, 6zol:g, 6zon:V, 6zp4:V, 6zuo:g, 6zv6:g, 6zvh:g, 6zvj:V, 6zvk:a3, 6zxd:g, 6zxe:g, 6zxf:g, 6zxg:g, 6zxh:g
20 4v6w:Ag 318 55 0.1892 0.0440 0.2545 9.0 6xu6:Ag, 6xu7:Ag, 6xu8:Ag
21 1t6b:X 676 41 0.1892 0.0207 0.3415 9.2 1acc:A, 3hvd:A, 3hvd:C, 3hvd:D, 3hvd:E, 3hvd:F, 3hvd:G, 3hvd:H, 3q8b:A, 3q8c:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417