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BioLiP
>protein
RESKCPTPGCDGTGHVTGLYPHHRSLSGCPHKDRVPPEILAMHENVLK

The query sequence (length=48) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1pxe:A 48 48 1.0000 1.0000 1.0000 8.72e-31
2 2mf8:A 75 44 0.5417 0.3467 0.5909 1.88e-13 2jx1:A
3 2mf8:A 75 27 0.4583 0.2933 0.8148 7.33e-11 2jx1:A
4 2jyd:A 46 31 0.4583 0.4783 0.7097 1.03e-11
5 2cs8:A 108 29 0.3750 0.1667 0.6207 2.01e-07
6 2cs8:A 108 31 0.3750 0.1667 0.5806 2.86e-07
7 1e1d:A 553 24 0.2083 0.0181 0.4167 1.3 1e2u:A, 1e9v:A, 1gnt:A, 1oa1:A, 1w9m:A
8 1rp1:A 441 36 0.2917 0.0317 0.3889 1.3
9 6seh:C 252 35 0.2292 0.0437 0.3143 2.6 6seh:A
10 2e7z:A 727 29 0.2083 0.0138 0.3448 3.0
11 8hw0:A 329 17 0.1667 0.0243 0.4706 3.4
12 4hnh:A 219 24 0.2500 0.0548 0.5000 5.0 4hnh:B
13 8adl:B 801 10 0.1458 0.0087 0.7000 5.3 8adl:G, 8adl:O, 8adl:J
14 1lpa:B 449 17 0.1667 0.0178 0.4706 5.6 1lpb:B
15 2yik:A 493 20 0.2083 0.0203 0.5000 5.7
16 1gpl:A 432 17 0.1667 0.0185 0.4706 6.1
17 6sei:A 276 16 0.1458 0.0254 0.4375 8.8 6sei:C
18 8dyu:A 2562 15 0.1667 0.0031 0.5333 9.5 8dyv:A
19 8fcy:A 2864 15 0.1667 0.0028 0.5333 9.5 8fd6:A, 8fdt:A
20 8pqw:A 2892 15 0.1667 0.0028 0.5333 9.5 8pqy:A, 8pqz:A, 8pqz:J
21 5nug:A 2920 15 0.1667 0.0027 0.5333 9.5 5nug:B
22 7z8g:A 3047 15 0.1667 0.0026 0.5333 9.5 8fdu:A, 7z8l:f
23 8ptk:f 4502 15 0.1667 0.0018 0.5333 9.5 8ptk:e
24 7z8f:e 4579 15 0.1667 0.0017 0.5333 9.5 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
25 3abi:A 349 14 0.1458 0.0201 0.5000 9.7 3abi:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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