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BioLiP
>protein
RAVTLRVLLKDELLEPGEGVLSIYYLGRKFTGDLQLDGRIVWQETGQVFNSPSAWATHCKKLVNPAKKSGWASVKYKGQK
LDKYKAAWLRRH

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ydw:A 92 92 1.0000 1.0000 1.0000 8.77e-65 7ydw:C
2 7xro:B 207 54 0.1739 0.0773 0.2963 0.91
3 7kwd:A 473 34 0.1196 0.0233 0.3235 1.5 7kwd:B
4 8kgf:A 1261 69 0.2174 0.0159 0.2899 1.5
5 1nj1:A 463 35 0.1739 0.0346 0.4571 1.6 1nj2:A, 1nj5:A, 1nj6:A
6 8iqi:C 916 43 0.1739 0.0175 0.3721 2.7 8iqc:A, 8iqc:B, 8iqd:A, 8iqd:B, 8iqd:C, 8iqd:D, 8iqi:A, 8iqi:B, 8iqi:D, 8iqi:E, 8iqi:F
7 5iv8:A 552 47 0.1630 0.0272 0.3191 3.4 5iv8:C
8 5joj:A 97 20 0.1087 0.1031 0.5000 4.6
9 1mai:A 119 21 0.0978 0.0756 0.4286 7.1
10 3sng:A 267 56 0.1848 0.0637 0.3036 7.4 4dj4:A, 4dj4:B, 4jdg:A
11 6wn6:B 264 50 0.1413 0.0492 0.2600 8.1 6wn6:A, 6wn6:C, 6wn6:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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