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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RARRLVMLRHGQTDYNVGSRMQGQLDTELSELGRTQAVAAAEVLGKRQPLLIVSSDLRRAYDTAVKLGERTGLVVRVDTR
LRETHLGDWQGLTHAQIDADAPGARLAWREDATWAPHGGESRVDVAARSRPLVAELVASEPEWGGADEPDRPVVLVAHGG
LIAALSAALLKLPVANWPALGGMGNASWTQLSGHWAPGSDFESIRWRLDVWNASAQV

The query sequence (length=217) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4pza:B 217 217 1.0000 1.0000 1.0000 2.45e-154 4pza:A, 4qih:A, 4qih:B
2 1h2e:A 207 174 0.2673 0.2802 0.3333 1.56e-17 1h2f:A
3 4ij6:A 207 191 0.2627 0.2754 0.2984 7.34e-16 4ij6:B
4 5zr2:C 198 194 0.2304 0.2525 0.2577 3.25e-10 6m1x:C, 6m1x:D, 5zr2:A, 5zr2:B, 5zr2:D
5 1qhf:A 240 98 0.1567 0.1417 0.3469 1.25e-08 1bq3:D, 1bq3:A, 1bq4:A, 5pgm:E, 1qhf:B
6 5htk:A 425 188 0.2304 0.1176 0.2660 8.84e-06 5hr5:A, 5htk:B
7 1k6m:A 432 185 0.2120 0.1065 0.2486 1.34e-05 1c7z:A, 1c7z:B, 1c80:A, 1c80:B, 1c81:A, 1fbt:A, 1fbt:B, 1k6m:B, 1tip:A, 1tip:B
8 1e59:A 239 98 0.1475 0.1339 0.3265 1.75e-05
9 1bif:A 432 188 0.2028 0.1019 0.2340 4.79e-04 2bif:A, 2bif:B
10 2axn:A 451 183 0.1982 0.0953 0.2350 7.33e-04 5ajv:B, 5ajw:A, 5ajx:A, 5ajy:A, 5ajz:A, 5ak0:A, 4d4j:A, 4d4k:A, 4d4l:A, 4d4m:A, 2dwo:A, 2dwp:A, 6etj:A, 6hvh:A, 6hvi:A, 6hvj:A, 2i1v:B, 6ibx:A, 6iby:A, 6ibz:A, 6ic0:A, 4ma4:A, 3qpu:A, 3qpv:A, 3qpw:A
11 3lg2:A 269 107 0.1336 0.1078 0.2710 0.004 3lg2:B, 3lg2:C, 3lg2:D, 3ll4:A, 3ll4:B, 3oi7:A, 3oi7:B, 3oi7:C, 3oi7:D
12 2h4z:A 255 99 0.1382 0.1176 0.3030 0.014 2f90:A, 2f90:B, 2h4z:B, 2hhj:A, 2hhj:B, 7n3r:B, 7n3s:A, 7n3s:B, 7thi:A, 7thi:B
13 4hka:A 345 40 0.0645 0.0406 0.3500 0.42
14 9emu:C 227 85 0.1567 0.1498 0.4000 0.62 9emu:A, 9emu:B, 9emu:D
15 3it5:A 182 68 0.0829 0.0989 0.2647 3.8 3it5:B, 3it5:E, 3it5:G, 3it7:A, 3it7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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