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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QYLLPEAKAQDSDKICVVINLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLA
KYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHD
LLPFFEQLSRVDDVYSVLRQ

The query sequence (length=180) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1t9z:A 181 180 0.9833 0.9779 0.9833 2.07e-131 6du2:A, 6du2:B, 6du3:A, 6du3:B, 2ghq:A, 2ghq:B, 2ght:A, 2ght:B, 3l0b:A, 3l0c:A, 3l0c:B, 3l0y:A, 3l0y:B, 3pgl:A, 3pgl:B, 1ta0:A, 4ygy:A, 4ygy:B, 4yh1:A, 4yh1:B
2 2hhl:C 184 172 0.7833 0.7663 0.8198 1.90e-106 2hhl:A, 2hhl:D
3 2q5e:A 181 178 0.7667 0.7624 0.7753 1.10e-104 2q5e:B, 2q5e:C, 2q5e:D, 2q5e:E, 2q5e:F, 2q5e:G, 2q5e:H
4 8ujm:B 237 174 0.4444 0.3376 0.4598 1.00e-41 8ujm:A
5 4qqf:F 191 166 0.3333 0.3141 0.3614 2.65e-27 3qle:A
6 3ef1:A 372 100 0.1278 0.0618 0.2300 1.48e-05 3ef0:A, 4xpz:A, 4xq0:A
7 7dhw:A 726 76 0.1611 0.0399 0.3816 1.00
8 4avn:A 420 76 0.1333 0.0571 0.3158 1.3 4avo:A, 4b4f:A, 4b4f:B
9 3egw:A 1244 53 0.0944 0.0137 0.3208 1.4 3ir5:A, 3ir6:A, 3ir7:A, 1q16:A, 1r27:A, 1r27:C, 1siw:A, 1y4z:A, 1y5i:A, 1y5l:A, 1y5n:A
10 6vw8:C 152 26 0.0611 0.0724 0.4231 1.4 6vw7:A, 6vw7:C, 6vw8:A
11 8beq:A 534 27 0.0611 0.0206 0.4074 3.1 8beq:B, 8bes:A, 8bes:B, 8bes:C, 8bes:D, 8bet:A, 8bet:B, 8bet:C, 8bet:D, 8beu:A, 8beu:B, 8beu:C, 8beu:D
12 8gxv:A 353 86 0.1333 0.0680 0.2791 3.9
13 2y3a:A 976 47 0.0944 0.0174 0.3617 3.9
14 2zu8:A 373 54 0.0889 0.0429 0.2963 5.7 2zu8:B, 2zu9:B, 2zu9:A
15 6n55:E 214 59 0.1111 0.0935 0.3390 5.7 6n53:A, 6n53:B, 6n54:A, 6n54:B, 6n55:D, 6n55:F, 6pwz:D, 6pwz:E, 6pwz:H, 7sql:A, 7sql:C, 7sql:B, 7sql:D, 1udw:A, 1udw:B, 1uei:A, 1uei:B, 1uej:A, 1uej:B, 1uj2:A, 1uj2:B, 1xrj:A, 1xrj:B
16 6a30:A 527 99 0.1500 0.0512 0.2727 6.4
17 7bi6:A 829 20 0.0667 0.0145 0.6000 6.5 8a9i:A, 7bi9:A, 7z74:A, 7z75:A
18 8tj5:T 801 21 0.0611 0.0137 0.5238 7.4 8tj5:R
19 7bi2:A 1021 20 0.0667 0.0118 0.6000 7.6
20 4j9v:A 456 22 0.0667 0.0263 0.5455 8.5 4j9u:H, 4j9u:G, 4j9u:E, 4j9u:F, 4j9v:B, 6v4k:E, 6v4k:F, 6v4k:G, 6v4k:H, 6v4l:C, 6v4l:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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