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BioLiP
>protein
QVRTLFVSGLPMDAKPRELYLLFRGARGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQDARKMLQGVRFDPEAAQVLRL
ELAKSNTKV

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5tkz:A 89 89 1.0000 1.0000 1.0000 2.33e-61 5tkz:B
2 5det:B 94 89 0.6292 0.5957 0.6292 1.88e-35 5det:A
3 4qqb:A 169 65 0.2697 0.1420 0.3692 1.55e-04 1b7f:A, 1b7f:B, 4qqb:B
4 2mb0:B 95 73 0.2584 0.2421 0.3151 0.002
5 6hpj:B 84 78 0.2472 0.2619 0.2821 0.005
6 2n7c:A 89 82 0.2584 0.2584 0.2805 0.017
7 8by6:B 152 69 0.2022 0.1184 0.2609 0.053 7abg:A1, 6d0y:A, 1h2t:Z, 1h2u:X, 1h2u:Y, 1n52:B, 5oo6:B, 5oo6:E, 5oo6:H, 5oo6:K, 5oo6:N, 5oo6:Q, 5oo6:T, 5oo6:W, 5oob:D, 5oob:J, 5oob:B, 5oob:G, 8pmp:B, 8pnt:B, 8srr:B, 8suy:B
8 4lmz:A 176 83 0.2584 0.1307 0.2771 0.063 3nmr:A, 3nna:A, 3nnc:A, 3nnh:A, 3nnh:C, 3nnh:B, 3nnh:D
9 4ed5:B 169 74 0.2472 0.1302 0.2973 0.098 4ed5:A
10 2n82:B 104 69 0.2472 0.2115 0.3188 0.27 2err:A, 7vrl:B
11 2fy1:A 108 73 0.2247 0.1852 0.2740 2.7
12 6jvx:A 87 59 0.2135 0.2184 0.3220 3.0 6jvy:A
13 8v5r:A 944 21 0.1011 0.0095 0.4286 3.1 8g5i:A, 8g5l:A, 8g5m:A, 8g5n:A, 8g5o:A, 8g5p:A, 8t7e:A
14 8udk:A 1012 21 0.1011 0.0089 0.4286 3.2 5c51:A, 5c52:A, 5c53:A, 4ztu:A, 4ztz:A
15 8g5j:A 941 21 0.1011 0.0096 0.4286 3.2
16 8d33:A 974 21 0.1011 0.0092 0.4286 3.3 8d37:A, 8d3r:A, 8d42:A, 8udl:A, 8v54:A
17 8g5k:A 905 21 0.1011 0.0099 0.4286 3.4
18 8i0v:4 161 22 0.1124 0.0621 0.4545 3.9
19 5o1y:A 163 77 0.2247 0.1227 0.2597 4.1 5o1z:A, 5o20:A
20 2leb:A 101 36 0.1348 0.1188 0.3333 6.8 2lec:A
21 1fnx:H 174 64 0.2135 0.1092 0.2969 8.6 1fxl:A, 1g2e:A
22 6i33:B 925 50 0.1798 0.0173 0.3200 9.9
23 6i34:B 954 50 0.1798 0.0168 0.3200 9.9 6i33:A, 6i34:A, 6i34:C, 6i34:D, 6i35:A, 6i35:B, 6i35:C, 6i35:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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