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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QVRPRSEISPQDCWDITPLYLNRKAWKADLDSFGLKSPTWPALQATQYQLDNSESLLSLLTTLFSIERKLNKLYVYAHLT
HDQDITNQEGIADLKSITHLHTLFAEETSWVQPALTSLSESLIAQHLSAPCLAPYRFYLEKIFRLSIHTGTPGEEKILAS
AFTPLEVASKAFSSLSDSEIPFGQATDSEGNSHPLSHALASLYMQSTDRELRKTSYLAQCERYHSYRHTFANLLNGKIQA
HVFYAKNKRYNSCLQAALYHNNIPTTVYTNLIDIVKKNSSLITKYFSIKQRCLNLKDFHFYDVYAPLSQEKKYTFQEAVD
LIYTSLSPLGTEYIDTLKQGLTTQGWVDKYENLNKRSGAYSSGCYDSHPYVLLNYTGTLYDVSVIAHEGGHSMHSYFSRK
HQPFHDAQYPIFLAEIASTLNEMLLMDSMLKESDSKEEKITILTRCLDTIFSTLFRQVLFASFEYDIHHAAEHGVPLTEE
YLSSTYKNLQNEFYGEIITFDVLSNIEWARIPHFYYNFYVYQYATGIIAALCFLEKILNNEDNALNSYLNFLKSGGSDFP
LEILKKSGLDMGTVEPIQKAFCFIEKKIQELSSLI

The query sequence (length=595) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ce2:A 595 595 1.0000 1.0000 1.0000 0.0
2 3ahm:A 564 395 0.1496 0.1578 0.2253 2.74e-07 3ahm:B, 3ahn:A, 3ahn:B, 3aho:A, 3aho:B
3 3sks:A 544 202 0.0924 0.1011 0.2723 4.75e-07
4 2h1n:A 566 257 0.1076 0.1131 0.2490 6.40e-07 2h1j:A, 2h1j:B, 2h1n:B
5 5l43:A 662 94 0.0471 0.0423 0.2979 0.12 5l43:B, 5l44:A, 5l44:B
6 3aii:A 455 48 0.0286 0.0374 0.3542 3.3
7 7aor:aa 1558 58 0.0269 0.0103 0.2759 4.2
8 8e2l:C 461 30 0.0134 0.0174 0.2667 6.0 8e2l:A, 8e2l:B, 8e2l:D, 8e2l:E, 8e2l:F
9 4xgl:A 342 56 0.0370 0.0643 0.3929 8.6 4rou:B, 4rou:A, 4xgm:A
10 7ytj:E 650 129 0.0555 0.0508 0.2558 8.6
11 8cbk:E 470 56 0.0370 0.0468 0.3929 9.1 7onu:E
12 5wf7:B 765 42 0.0185 0.0144 0.2619 9.6 5kji:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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